Literature DB >> 21199939

Simulation of surface processes.

Hannes Jónsson1.   

Abstract

Computer simulations of surface processes can reveal unexpected insight regarding atomic-scale structure and transitions. Here, the strengths and weaknesses of some commonly used approaches are reviewed as well as promising avenues for improvements. The electronic degrees of freedom are usually described by gradient-dependent functionals within Kohn-Sham density functional theory. Although this level of theory has been remarkably successful in numerous studies, several important problems require a more accurate theoretical description. It is important to develop new tools to make it possible to study, for example, localized defect states and band gaps in large and complex systems. Preliminary results presented here show that orbital density-dependent functionals provide a promising avenue, but they require the development of new numerical methods and substantial changes to codes designed for Kohn-Sham density functional theory. The nuclear degrees of freedom can, in most cases, be described by the classical equations of motion; however, they still pose a significant challenge, because the time scale of interesting transitions, which typically involve substantial free energy barriers, is much longer than the time scale of vibrations--often 10 orders of magnitude. Therefore, simulation of diffusion, structural annealing, and chemical reactions cannot be achieved with direct simulation of the classical dynamics. Alternative approaches are needed. One such approach is transition state theory as implemented in the adaptive kinetic Monte Carlo algorithm, which, thus far, has relied on the harmonic approximation but could be extended and made applicable to systems with rougher energy landscape and transitions through quantum mechanical tunneling.

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Year:  2011        PMID: 21199939      PMCID: PMC3024682          DOI: 10.1073/pnas.1006670108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  Theoretical calculations of dissociative adsorption of CH4 on an Ir(111) surface.

Authors:  G Henkelman; H Jónsson
Journal:  Phys Rev Lett       Date:  2001-01-22       Impact factor: 9.161

2.  Generalized Gradient Approximation Made Simple.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

3.  Comparison of methods for finding saddle points without knowledge of the final states.

Authors:  R A Olsen; G J Kroes; G Henkelman; A Arnaldsson; H Jónsson
Journal:  J Chem Phys       Date:  2004-11-22       Impact factor: 3.488

4.  Surface self-diffusion on Pt(001) by an atomic exchange mechanism.

Authors: 
Journal:  Phys Rev Lett       Date:  1990-06-25       Impact factor: 9.161

5.  Diffusion path for an Al adatom on Al(001).

Authors: 
Journal:  Phys Rev Lett       Date:  1990-08-06       Impact factor: 9.161

6.  Parallel implementation of Γ-point pseudopotential plane-wave DFT with exact exchange.

Authors:  Eric J Bylaska; Kiril Tsemekhman; Scott B Baden; John H Weare; Hannes Jonsson
Journal:  J Comput Chem       Date:  2011-01-15       Impact factor: 3.376

7.  Adaptive kinetic Monte Carlo for first-principles accelerated dynamics.

Authors:  Lijun Xu; Graeme Henkelman
Journal:  J Chem Phys       Date:  2008-09-21       Impact factor: 3.488

8.  Comparison of quantum dynamics and quantum transition state theory estimates of the H + CH4 reaction rate.

Authors:  Stefan Andersson; Gunnar Nyman; Andri Arnaldsson; Uwe Manthe; Hannes Jónsson
Journal:  J Phys Chem A       Date:  2009-04-23       Impact factor: 2.781

9.  Optimization by simulated annealing.

Authors:  S Kirkpatrick; C D Gelatt; M P Vecchi
Journal:  Science       Date:  1983-05-13       Impact factor: 47.728

10.  Reactive and nonreactive scattering of H2 from a metal surface is electronically adiabatic.

Authors:  Pablo Nieto; Ernst Pijper; Daniel Barredo; Guillaume Laurent; Roar A Olsen; Evert-Jan Baerends; Geert-Jan Kroes; Daniel Farías
Journal:  Science       Date:  2006-02-09       Impact factor: 47.728

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  8 in total

1.  Surface chemistry: key to control and advance myriad technologies.

Authors:  John T Yates; Charles T Campbell
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-18       Impact factor: 11.205

2.  NCO(-), a key fragment upon dissociative electron attachment and electron transfer to pyrimidine bases: site selectivity for a slow decay process.

Authors:  Filipe Ferreira da Silva; Carolina Matias; Diogo Almeida; Gustavo García; Oddur Ingólfsson; Helga Dögg Flosadóttir; Benedikt Ómarsson; Sylwia Ptasinska; Benjamin Puschnigg; Paul Scheier; Paulo Limão-Vieira; Stephan Denifl
Journal:  J Am Soc Mass Spectrom       Date:  2013-09-17       Impact factor: 3.109

3.  Charge localization in a diamine cation provides a test of energy functionals and self-interaction correction.

Authors:  Xinxin Cheng; Yao Zhang; Elvar Jónsson; Hannes Jónsson; Peter M Weber
Journal:  Nat Commun       Date:  2016-03-16       Impact factor: 14.919

4.  Atomic Scale Formation Mechanism of Edge Dislocation Relieving Lattice Strain in a GeSi overlayer on Si(001).

Authors:  E Maras; L Pizzagalli; T Ala-Nissila; H Jónsson
Journal:  Sci Rep       Date:  2017-09-20       Impact factor: 4.379

5.  Formation of the prebiotic molecule NH2CHO on astronomical amorphous solid water surfaces: accurate tunneling rate calculations.

Authors:  Lei Song; Johannes Kästner
Journal:  Phys Chem Chem Phys       Date:  2016-10-26       Impact factor: 3.676

6.  Quantum tunneling during interstellar surface-catalyzed formation of water: the reaction H + H2O2 → H2O + OH.

Authors:  Thanja Lamberts; Pradipta Kumar Samanta; Andreas Köhn; Johannes Kästner
Journal:  Phys Chem Chem Phys       Date:  2016-12-07       Impact factor: 3.676

7.  Instanton theory for Fermi's golden rule and beyond.

Authors:  Imaad M Ansari; Eric R Heller; George Trenins; Jeremy O Richardson
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2022-03-28       Impact factor: 4.226

8.  Origins of fast diffusion of water dimers on surfaces.

Authors:  Wei Fang; Ji Chen; Philipp Pedevilla; Xin-Zheng Li; Jeremy O Richardson; Angelos Michaelides
Journal:  Nat Commun       Date:  2020-04-03       Impact factor: 14.919

  8 in total

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