Literature DB >> 2119802

Replacement of a cis proline simplifies the mechanism of ribonuclease T1 folding.

T Kiefhaber1, H P Grunert, U Hahn, F X Schmid.   

Abstract

The refolding of ribonuclease T1 is dominated by two major slow kinetic phases that show properties of proline isomerization reactions. We report here that the molecular origin of one of these processes is the trans----cis isomerization of the Ser54-Pro55 peptide bond, which is cis in the native protein but predominantly trans in unfolded ribonuclease T1. This is shown by a comparison of the wild type and a designed mutant protein where Ser54 and Pro55 were replaced by Gly54 and Asn55, respectively. This mutation leaves the thermal stability of the protein almost unchanged; however, in the absence of Pro55 one of the two slow phases in folding is abolished and the kinetic mechanism of refolding is dramatically simplified.

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Year:  1990        PMID: 2119802     DOI: 10.1021/bi00479a020

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  25 in total

1.  Early formation of a beta hairpin during folding of staphylococcal nuclease H124L as detected by pulsed hydrogen exchange.

Authors:  William F Walkenhorst; Jason A Edwards; John L Markley; Heinrich Roder
Journal:  Protein Sci       Date:  2002-01       Impact factor: 6.725

2.  Exploring knotting mechanisms in protein folding.

Authors:  Anna L Mallam; Elizabeth R Morris; Sophie E Jackson
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-17       Impact factor: 11.205

3.  Cis proline mutants of ribonuclease A. II. Elimination of the slow-folding forms by mutation.

Authors:  D A Schultz; F X Schmid; R L Baldwin
Journal:  Protein Sci       Date:  1992-07       Impact factor: 6.725

4.  Structure of a rapidly formed intermediate in ribonuclease T1 folding.

Authors:  T Kiefhaber; F X Schmid; K Willaert; Y Engelborghs; A Chaffotte
Journal:  Protein Sci       Date:  1992-09       Impact factor: 6.725

5.  Reversible unfolding and refolding behavior of a monomeric aldolase from Staphylococcus aureus.

Authors:  R Rudolph; R Siebendritt; T Kiefhaber
Journal:  Protein Sci       Date:  1992-05       Impact factor: 6.725

6.  Automatic recognition of hydrophobic clusters and their correlation with protein folding units.

Authors:  M H Zehfus
Journal:  Protein Sci       Date:  1995-06       Impact factor: 6.725

7.  A thermodynamic coupling mechanism for GroEL-mediated unfolding.

Authors:  S Walter; G H Lorimer; F X Schmid
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-03       Impact factor: 11.205

8.  The cis conformation of proline leads to weaker binding of a p53 peptide to MDM2 compared to trans.

Authors:  Yingqian Ada Zhan; F Marty Ytreberg
Journal:  Arch Biochem Biophys       Date:  2015-04-01       Impact factor: 4.013

9.  Dimeric Structure of the Bacterial Extracellular Foldase PrsA.

Authors:  Roman P Jakob; Johanna R Koch; Björn M Burmann; Philipp A M Schmidpeter; Moritz Hunkeler; Sebastian Hiller; Franz X Schmid; Timm Maier
Journal:  J Biol Chem       Date:  2014-12-17       Impact factor: 5.157

10.  Green-lighting green fluorescent protein: faster and more efficient folding by eliminating a cis-trans peptide isomerization event.

Authors:  David J Rosenman; Yao-ming Huang; Ke Xia; Keith Fraser; Victoria E Jones; Colleen M Lamberson; Patrick Van Roey; Wilfredo Colón; Christopher Bystroff
Journal:  Protein Sci       Date:  2014-01-30       Impact factor: 6.725

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