Literature DB >> 21197665

Functional genomics of the brain: uncovering networks in the CNS using a systems approach.

Genevieve Konopka1.   

Abstract

The central nervous system (CNS) is undoubtedly the most complex human organ system in terms of its diverse functions, cellular composition, and connections. Attempts to capture this diversity experimentally were the foundation on which the field of neurobiology was built. Until now though, techniques were either painstakingly slow or insufficient in capturing this heterogeneity. In addition, the combination of multiple layers of information needed for a complete picture of neuronal diversity from the epigenome to the proteome requires an even more complex compilation of data. In this era of high-throughput genomics though, the ability to isolate and profile neurons and brain tissue has increased tremendously and now requires less effort. Both microarrays and next-generation sequencing have identified neuronal transcriptomes and signaling networks involved in normal brain development, as well as in disease. However, the expertise needed to organize and prioritize the resultant data remains substantial. A combination of supervised organization and unsupervised analyses are needed to fully appreciate the underlying structure in these datasets. When utilized effectively, these analyses have yielded striking insights into a number of fundamental questions in neuroscience on topics ranging from the evolution of the human brain to neuropsychiatric and neurodegenerative disorders. Future studies will incorporate these analyses with behavioral and physiological data from patients to more efficiently move toward personalized therapeutics.
Copyright © 2010 John Wiley & Sons, Inc.

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Year:  2010        PMID: 21197665     DOI: 10.1002/wsbm.139

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Syst Biol Med        ISSN: 1939-005X


  7 in total

1.  Mutations in SNX14 cause a distinctive autosomal-recessive cerebellar ataxia and intellectual disability syndrome.

Authors:  Anna C Thomas; Hywel Williams; Núria Setó-Salvia; Chiara Bacchelli; Dagan Jenkins; Mary O'Sullivan; Konstantinos Mengrelis; Miho Ishida; Louise Ocaka; Estelle Chanudet; Chela James; Francesco Lescai; Glenn Anderson; Deborah Morrogh; Mina Ryten; Andrew J Duncan; Yun Jin Pai; Jorge M Saraiva; Fabiana Ramos; Bernadette Farren; Dawn Saunders; Bertrand Vernay; Paul Gissen; Anna Straatmaan-Iwanowska; Frank Baas; Nicholas W Wood; Joshua Hersheson; Henry Houlden; Jane Hurst; Richard Scott; Maria Bitner-Glindzicz; Gudrun E Moore; Sérgio B Sousa; Philip Stanier
Journal:  Am J Hum Genet       Date:  2014-11-06       Impact factor: 11.025

2.  Modeling the functional genomics of autism using human neurons.

Authors:  G Konopka; E Wexler; E Rosen; Z Mukamel; G E Osborn; L Chen; D Lu; F Gao; K Gao; J K Lowe; D H Geschwind
Journal:  Mol Psychiatry       Date:  2011-06-07       Impact factor: 15.992

3.  The Dlx5 and Foxg1 transcription factors, linked via miRNA-9 and -200, are required for the development of the olfactory and GnRH system.

Authors:  Giulia Garaffo; Daniele Conte; Paolo Provero; Daniela Tomaiuolo; Zheng Luo; Patrizia Pinciroli; Clelia Peano; Ilaria D'Atri; Yorick Gitton; Talya Etzion; Yoav Gothilf; Dafne Gays; Massimo M Santoro; Giorgio R Merlo
Journal:  Mol Cell Neurosci       Date:  2015-04-30       Impact factor: 4.314

4.  Complex network-driven view of genomic mechanisms underlying Parkinson's disease: analyses in dorsal motor vagal nucleus, locus coeruleus, and substantia nigra.

Authors:  Beatriz Raposo Corradini; Priscila Iamashita; Edilaine Tampellini; José Marcelo Farfel; Lea Tenenholz Grinberg; Carlos Alberto Moreira-Filho
Journal:  Biomed Res Int       Date:  2014-11-26       Impact factor: 3.411

5.  Construction and Validation of a Newly Prognostic Signature for CRISPR-Cas9-Based Cancer Dependency Map Genes in Breast Cancer.

Authors:  Xin Yan; Sai-Nan You; Yan Chen; Ke Qian
Journal:  J Oncol       Date:  2022-01-19       Impact factor: 4.375

6.  Insights from cerebellar transcriptomic analysis into the pathogenesis of ataxia.

Authors:  Conceição Bettencourt; Mina Ryten; Paola Forabosco; Stephanie Schorge; Joshua Hersheson; John Hardy; Henry Houlden
Journal:  JAMA Neurol       Date:  2014-07-01       Impact factor: 18.302

7.  Gene co-expression networks shed light into diseases of brain iron accumulation.

Authors:  Conceição Bettencourt; Paola Forabosco; Sarah Wiethoff; Moones Heidari; Daniel M Johnstone; Juan A Botía; Joanna F Collingwood; John Hardy; Elizabeth A Milward; Mina Ryten; Henry Houlden
Journal:  Neurobiol Dis       Date:  2015-12-18       Impact factor: 5.996

  7 in total

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