Literature DB >> 21194372

Pathways of transport protein evolution: recent advances.

Vincent H Lam1, Jong-Hoon Lee, Abe Silverio, Henry Chan, Kenny M Gomolplitinant, Tatyana L Povolotsky, Ekaterina Orlova, Eric I Sun, Carl H Welliver, Milton H Saier.   

Abstract

We herein report recent advances in our understanding of transport protein evolution. Numerous families of complex transmembrane transport proteins are believed to have arisen from short channel-forming amphipathic or hydrophobic peptides by various types of intragenic duplication events. Distinct pathways distinguish families, demonstrating independent origins for some, and allowing assignment of others to superfamilies. Some families have diversified in topology, whereas others have remained uniform. An example of 'retroevolution' was discovered where a more complex carrier gave rise to a structurally and functionally simpler channel. The results described in this review article expand our understanding of protein evolution.

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Year:  2011        PMID: 21194372      PMCID: PMC4008129          DOI: 10.1515/BC.2011.018

Source DB:  PubMed          Journal:  Biol Chem        ISSN: 1431-6730            Impact factor:   3.915


  24 in total

Review 1.  A functional-phylogenetic classification system for transmembrane solute transporters.

Authors:  M H Saier
Journal:  Microbiol Mol Biol Rev       Date:  2000-06       Impact factor: 11.056

Review 2.  Families of transmembrane transporters selective for amino acids and their derivatives.

Authors:  M H Saier
Journal:  Microbiology       Date:  2000-08       Impact factor: 2.777

Review 3.  Evolution of transport proteins.

Authors:  M H Saier
Journal:  Genet Eng (N Y)       Date:  2001

Review 4.  Vectorial metabolism and the evolution of transport systems.

Authors:  M H Saier
Journal:  J Bacteriol       Date:  2000-09       Impact factor: 3.490

5.  The bioinformatic study of transmembrane molecular transport.

Authors:  Milton H Saier; Qinghu Ren
Journal:  J Mol Microbiol Biotechnol       Date:  2006

6.  Active transport in communication, protection and nutrition.

Authors:  Milton H Saier
Journal:  J Mol Microbiol Biotechnol       Date:  2007

Review 7.  Phylogenetic approaches to the identification and characterization of protein families and superfamilies.

Authors:  M H Saier
Journal:  Microb Comp Genomics       Date:  1996

8.  Defense against cannibalism: the SdpI family of bacterial immunity/signal transduction proteins.

Authors:  Tatyana Leonidovna Povolotsky; Ekaterina Orlova; Dorjee G Tamang; Milton H Saier
Journal:  J Membr Biol       Date:  2010-06-19       Impact factor: 1.843

9.  Evolutionary origins of members of a superfamily of integral membrane cytochrome c biogenesis proteins.

Authors:  Jong-Hoon Lee; Edgar M Harvat; Julie M Stevens; Stuart J Ferguson; Milton H Saier
Journal:  Biochim Biophys Acta       Date:  2007-05-03

10.  TCDB: the Transporter Classification Database for membrane transport protein analyses and information.

Authors:  Milton H Saier; Can V Tran; Ravi D Barabote
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

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  16 in total

Review 1.  Transport protein evolution deduced from analysis of sequence, topology and structure.

Authors:  Milton H Saier
Journal:  Curr Opin Struct Biol       Date:  2016-06-04       Impact factor: 6.809

2.  The Membrane Attack Complex/Perforin Superfamily.

Authors:  Gabriel Moreno-Hagelsieb; Bennett Vitug; Arturo Medrano-Soto; Milton H Saier
Journal:  J Mol Microbiol Biotechnol       Date:  2017-11-17

3.  Functional Dependence between Septal Protein SepJ from Anabaena sp. Strain PCC 7120 and an Amino Acid ABC-Type Uptake Transporter.

Authors:  Leticia Escudero; Vicente Mariscal; Enrique Flores
Journal:  J Bacteriol       Date:  2015-06-15       Impact factor: 3.490

4.  Topological and phylogenetic analyses of bacterial holin families and superfamilies.

Authors:  Bhaskara L Reddy; Milton H Saier
Journal:  Biochim Biophys Acta       Date:  2013-07-13

5.  Comparative genomic analyses of transport proteins encoded within the red algae Chondrus crispus, Galdieria sulphuraria, and Cyanidioschyzon merolae11.

Authors:  Justin Lee; Shounak Ghosh; Milton H Saier
Journal:  J Phycol       Date:  2017-04-26       Impact factor: 2.923

6.  Reliability of nine programs of topological predictions and their application to integral membrane channel and carrier proteins.

Authors:  Abhinay Reddy; Jaehoon Cho; Sam Ling; Vamsee Reddy; Maksim Shlykov; Milton H Saier
Journal:  J Mol Microbiol Biotechnol       Date:  2014-06-27

7.  Bioinformatic analyses of integral membrane transport proteins encoded within the genome of the planctomycetes species, Rhodopirellula baltica.

Authors:  Philipp Paparoditis; Ake Västermark; Andrew J Le; John A Fuerst; Milton H Saier
Journal:  Biochim Biophys Acta       Date:  2013-08-19

8.  The transporter-opsin-G protein-coupled receptor (TOG) superfamily.

Authors:  Daniel C Yee; Maksim A Shlykov; Ake Västermark; Vamsee S Reddy; Sumit Arora; Eric I Sun; Milton H Saier
Journal:  FEBS J       Date:  2013-09-23       Impact factor: 5.542

Review 9.  Lipid dependencies, biogenesis and cytoplasmic micellar forms of integral membrane sugar transport proteins of the bacterial phosphotransferase system.

Authors:  Mohammad Aboulwafa; Milton H Saier
Journal:  Microbiology       Date:  2013-08-28       Impact factor: 2.777

10.  The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam.

Authors:  Zachary Chiang; Ake Vastermark; Marco Punta; Penelope C Coggill; Jaina Mistry; Robert D Finn; Milton H Saier
Journal:  Brief Bioinform       Date:  2015-01-21       Impact factor: 11.622

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