Literature DB >> 21185262

Design, synthesis and DNA binding properties of orthogonally positioned diamino containing polyamide f-IPI.

Balaji Babu1, Yang Liu, Adam Plaunt, Camille Riddering, Ross Ogilvie, Laura Westrate, Ryan Davis, Amanda Ferguson, Hilary Mackay, Toni Rice, Sameer Chavda, David Wilson, Shicai Lin, Konstantinos Kiakos, John A Hartley, Moses Lee.   

Abstract

An orthogonally positioned diamino/dicationic polyamide f-IPI 2 was synthesized. It has enhanced binding affinity, and it showed comparable sequence specificity to its monoamino/monocationic counterpart f-IPI 1. Results from CD and DNase I footprinting studies confirmed the minor groove binding and selectivity of polyamides 1 and 2 for the cognate sequence 5'-ACGCGT-3'. SPR studies provided their binding constants: 2.4 × 10(8)M(-1) for diamino 2, which is ∼4 times higher than 5.4 × 10(7)M(-1) for its monoamino analogue 1.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 21185262     DOI: 10.1016/j.bbrc.2010.12.073

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  4 in total

1.  Promoter scanning of the human COX-2 gene with 8-ring polyamides: unexpected weakening of polyamide-DNA binding and selectivity by replacing an internal N-Me-pyrrole with β-alanine.

Authors:  James K Bashkin; Karl Aston; Joseph P Ramos; Kevin J Koeller; Rupesh Nanjunda; Gaofei He; Cynthia M Dupureur; W David Wilson
Journal:  Biochimie       Date:  2012-09-27       Impact factor: 4.079

2.  Modulation of topoisomerase IIα expression and chemosensitivity through targeted inhibition of NF-Y:DNA binding by a diamino p-anisyl-benzimidazole (Hx) polyamide.

Authors:  Luke Pett; Konstantinos Kiakos; Vijay Satam; Pravin Patil; Sarah Laughlin-Toth; Matthew Gregory; Michael Bowerman; Kevin Olson; Mia Savagian; Megan Lee; Moses Lee; W David Wilson; Daniel Hochhauser; John A Hartley
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2016-10-24       Impact factor: 4.490

Review 3.  Programmable DNA-binding small molecules.

Authors:  Meghan S Blackledge; Christian Melander
Journal:  Bioorg Med Chem       Date:  2013-04-18       Impact factor: 3.641

4.  Affinity and kinetic modulation of polyamide-DNA interactions by N-modification of the heterocycles.

Authors:  Joseph P Ramos; Balaji Babu; Sameer Chavda; Yang Liu; Adam Plaunt; Amanda Ferguson; Mia Savagian; Megan Lee; Samuel Tzou; Shicai Lin; Konstantinos Kiakos; Shuo Wang; Moses Lee; John A Hartley; W David Wilson
Journal:  Biopolymers       Date:  2013-08       Impact factor: 2.505

  4 in total

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