Literature DB >> 21184215

Random transposon mutagenesis of Verrucomicrobium spinosum DSM 4136(T).

Daryl B Domman1, Blaire T Steven, Naomi L Ward.   

Abstract

The Verrucomicrobia are a bacterial group of growing interest due to their environmental ubiquity as free-living and host-associated microbes. They also exhibit an unusual compartmentalized cell plan, shared with members of neighboring phyla that include the Planctomycete bacteria. However, Verrucomicrobia are currently difficult to study, due to a lack of available genetic tools that would permit robust testing of hypotheses formulated from ecological and genomic data. To our knowledge, there are no published studies describing the transformation of exogenous DNA into any members of the Verrucomicrobia (or the neighboring phylum containing Planctomycetes). Here, we present a procedure for the transformation of DNA into Verrucomicrobium spinosum DSM 4136(T) via electroporation and the first description of a random transposon mutant library in this organism. We anticipate that this approach could be applied successfully to other Verrucomicrobia, providing opportunities to test the role of predicted gene function in ecological interactions and identify genes associated with the distinctive Planctomycete-Verrucomicrobial cell plan.

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Year:  2010        PMID: 21184215     DOI: 10.1007/s00203-010-0666-5

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  9 in total

1.  Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems.

Authors:  Mark W J van Passel; Ravi Kant; Airi Palva; Alex Copeland; Susan Lucas; Alla Lapidus; Tijana Glavina del Rio; Sam Pitluck; Eugene Goltsman; Alicia Clum; Hui Sun; Jeremy Schmutz; Frank W Larimer; Miriam L Land; Loren Hauser; Nikolaos Kyrpides; Natalia Mikhailova; P Paul Richardson; Peter H Janssen; Willem M de Vos; Hauke Smidt
Journal:  J Bacteriol       Date:  2011-03-11       Impact factor: 3.490

2.  Characterization of Planctomyces limnophilus and development of genetic tools for its manipulation establish it as a model species for the phylum Planctomycetes.

Authors:  Christian Jogler; Frank Oliver Glöckner; Roberto Kolter
Journal:  Appl Environ Microbiol       Date:  2011-07-01       Impact factor: 4.792

3.  Genomic and Biochemical Analysis of the Diaminopimelate and Lysine Biosynthesis Pathway in Verrucomicrobium spinosum: Identification and Partial Characterization of L,L-Diaminopimelate Aminotransferase and UDP-N-Acetylmuramoylalanyl-D-glutamyl-2,6-meso-Diaminopimelate Ligase.

Authors:  Victoria R Nachar; Francisco C Savka; Sean E McGroty; Katherine A Donovan; Rachel A North; Renwick C J Dobson; Larry J Buckley; André O Hudson
Journal:  Front Microbiol       Date:  2012-05-25       Impact factor: 5.640

4.  Genomic and Experimental Evidence Suggests that Verrucomicrobium spinosum Interacts with Eukaryotes.

Authors:  Michelle Sait; Olga K Kamneva; David S Fay; Natalia V Kirienko; James Polek; Mimi M Shirasu-Hiza; Naomi L Ward
Journal:  Front Microbiol       Date:  2011-10-18       Impact factor: 5.640

5.  Proteins Related to the Type I Secretion System Are Associated with Secondary SecA_DEAD Domain Proteins in Some Species of Planctomycetes, Verrucomicrobia, Proteobacteria, Nitrospirae and Chlorobi.

Authors:  Olga K Kamneva; Saroj Poudel; Naomi L Ward
Journal:  PLoS One       Date:  2015-06-01       Impact factor: 3.240

Review 6.  Evolutionary Cell Biology of Division Mode in the Bacterial Planctomycetes-Verrucomicrobia- Chlamydiae Superphylum.

Authors:  Elena Rivas-Marín; Inés Canosa; Damien P Devos
Journal:  Front Microbiol       Date:  2016-12-06       Impact factor: 5.640

7.  Analysis of genome content evolution in pvc bacterial super-phylum: assessment of candidate genes associated with cellular organization and lifestyle.

Authors:  Olga K Kamneva; Stormy J Knight; David A Liberles; Naomi L Ward
Journal:  Genome Biol Evol       Date:  2012       Impact factor: 3.416

8.  Biochemical characterization of UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-2,6-diaminopimelate ligase (MurE) from Verrucomicrobium spinosum DSM 4136(T.).

Authors:  Sean E McGroty; Dhivya T Pattaniyil; Delphine Patin; Didier Blanot; Arvind C Ravichandran; Hironori Suzuki; Renwick C J Dobson; Michael A Savka; André O Hudson
Journal:  PLoS One       Date:  2013-06-13       Impact factor: 3.240

Review 9.  The Paradigms They Are a-Changin': past, present and future of PVC bacteria research.

Authors:  Elena Rivas-Marín; Damien P Devos
Journal:  Antonie Van Leeuwenhoek       Date:  2017-10-20       Impact factor: 2.271

  9 in total

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