Literature DB >> 21183664

Complete genome sequence of the metabolically versatile plant growth-promoting endophyte Variovorax paradoxus S110.

Jong-In Han1, Hong-Kyu Choi, Seung-Won Lee, Paul M Orwin, Jina Kim, Sarah L Laroe, Tae-Gyu Kim, Jennifer O'Neil, Jared R Leadbetter, Sang Yup Lee, Cheol-Goo Hur, Jim C Spain, Galina Ovchinnikova, Lynne Goodwin, Cliff Han.   

Abstract

Variovorax paradoxus is a microorganism of special interest due to its diverse metabolic capabilities, including the biodegradation of both biogenic compounds and anthropogenic contaminants. V. paradoxus also engages in mutually beneficial interactions with both bacteria and plants. The complete genome sequence of V. paradoxus S110 is composed of 6,754,997 bp with 6,279 predicted protein-coding sequences within two circular chromosomes. Genomic analysis has revealed multiple metabolic features for autotrophic and heterotrophic lifestyles. These metabolic diversities enable independent survival, as well as a symbiotic lifestyle. Consequently, S110 appears to have evolved into a superbly adaptable microorganism that is able to survive in ever-changing environmental conditions. Based on our findings, we suggest V. paradoxus S110 as a potential candidate for agrobiotechnological applications, such as biofertilizer and biopesticide. Because it has many associations with other biota, it is also suited to serve as an additional model system for studies of microbe-plant and microbe-microbe interactions.

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Year:  2010        PMID: 21183664      PMCID: PMC3067606          DOI: 10.1128/JB.00925-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  44 in total

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4.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

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Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

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Journal:  FEMS Microbiol Lett       Date:  1998-04-15       Impact factor: 2.742

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9.  Variation in antibiosis ability, against potato pathogens, of bacterial communities recovered from the endo- and exoroots of potato crops produced under conventional versus minimum tillage systems.

Authors:  A V Sturz; R D Peters; M R Carter; J B Sanderson; B G Matheson; B R Christie
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Authors:  J Dörr; T Hurek; B Reinhold-Hurek
Journal:  Mol Microbiol       Date:  1998-10       Impact factor: 3.501

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  50 in total

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2.  Microbiomes of unreactive and pathologically altered ileocecal lymph nodes of slaughter pigs.

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3.  Microbial expression profiles in the rhizosphere of willows depend on soil contamination.

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4.  The Plant Growth-Promoting Rhizobacterium Variovorax boronicumulans CGMCC 4969 Regulates the Level of Indole-3-Acetic Acid Synthesized from Indole-3-Acetonitrile.

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5.  Isolation of Paenibacillus sp. and Variovorax sp. strains from decaying woods and characterization of their potential for cellulose deconstruction.

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6.  Proposal of three novel species of soil bacteria, Variovorax ureilyticus, Variovorax rhizosphaerae, and Variovorax robiniae, in the family Comamonadaceae.

Authors:  Tuan Manh Nguyen; Ngoc Hoang Trinh; Jaisoo Kim
Journal:  J Microbiol       Date:  2018-06-14       Impact factor: 3.422

7.  De novo sequencing and assembly of the whole genome of Novosphingobium sp. strain PP1Y.

Authors:  V D'Argenio; M Petrillo; P Cantiello; B Naso; L Cozzuto; E Notomista; G Paolella; A Di Donato; F Salvatore
Journal:  J Bacteriol       Date:  2011-06-17       Impact factor: 3.490

8.  Identification of 3-sulfinopropionyl coenzyme A (CoA) desulfinases within the Acyl-CoA dehydrogenase superfamily.

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Journal:  J Bacteriol       Date:  2013-12-06       Impact factor: 3.490

9.  Succinyl-CoA:3-sulfinopropionate CoA-transferase from Variovorax paradoxus strain TBEA6, a novel member of the class III coenzyme A (CoA)-transferase family.

Authors:  Marc Schürmann; Beatrice Hirsch; Jan Hendrik Wübbeler; Nadine Stöveken; Alexander Steinbüchel
Journal:  J Bacteriol       Date:  2013-06-14       Impact factor: 3.490

10.  Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants.

Authors:  Thomas R Turner; Karunakaran Ramakrishnan; John Walshaw; Darren Heavens; Mark Alston; David Swarbreck; Anne Osbourn; Alastair Grant; Philip S Poole
Journal:  ISME J       Date:  2013-07-18       Impact factor: 10.302

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