Literature DB >> 21179161

Genetic history of an archaic hominin group from Denisova Cave in Siberia.

David Reich1, Richard E Green, Martin Kircher, Johannes Krause, Nick Patterson, Eric Y Durand, Bence Viola, Adrian W Briggs, Udo Stenzel, Philip L F Johnson, Tomislav Maricic, Jeffrey M Good, Tomas Marques-Bonet, Can Alkan, Qiaomei Fu, Swapan Mallick, Heng Li, Matthias Meyer, Evan E Eichler, Mark Stoneking, Michael Richards, Sahra Talamo, Michael V Shunkov, Anatoli P Derevianko, Jean-Jacques Hublin, Janet Kelso, Montgomery Slatkin, Svante Pääbo.   

Abstract

Using DNA extracted from a finger bone found in Denisova Cave in southern Siberia, we have sequenced the genome of an archaic hominin to about 1.9-fold coverage. This individual is from a group that shares a common origin with Neanderthals. This population was not involved in the putative gene flow from Neanderthals into Eurasians; however, the data suggest that it contributed 4-6% of its genetic material to the genomes of present-day Melanesians. We designate this hominin population 'Denisovans' and suggest that it may have been widespread in Asia during the Late Pleistocene epoch. A tooth found in Denisova Cave carries a mitochondrial genome highly similar to that of the finger bone. This tooth shares no derived morphological features with Neanderthals or modern humans, further indicating that Denisovans have an evolutionary history distinct from Neanderthals and modern humans.

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Year:  2010        PMID: 21179161      PMCID: PMC4306417          DOI: 10.1038/nature09710

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  32 in total

1.  A view of Neandertal genetic diversity.

Authors:  M Krings; C Capelli; F Tschentscher; H Geisert; S Meyer; A von Haeseler; K Grossschmidt; G Possnert; M Paunovic; S Pääbo
Journal:  Nat Genet       Date:  2000-10       Impact factor: 38.330

2.  A new small-bodied hominin from the Late Pleistocene of Flores, Indonesia.

Authors:  P Brown; T Sutikna; M J Morwood; R P Soejono; E Wayhu Saptomo; Rokus Awe Due
Journal:  Nature       Date:  2004-10-28       Impact factor: 49.962

3.  Archaeology and age of a new hominin from Flores in eastern Indonesia.

Authors:  M J Morwood; R P Soejono; R G Roberts; T Sutikna; C S M Turney; K E Westaway; W J Rink; J-X Zhao; G D van den Bergh; Rokus Awe Due; D R Hobbs; M W Moore; M I Bird; L K Fifield
Journal:  Nature       Date:  2004-10-28       Impact factor: 49.962

4.  Revisiting Neandertal diversity with a 100,000 year old mtDNA sequence.

Authors:  Ludovic Orlando; Pierre Darlu; Michel Toussaint; Dominique Bonjean; Marcel Otte; Catherine Hänni
Journal:  Curr Biol       Date:  2006-06-06       Impact factor: 10.834

5.  Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA.

Authors:  Hendrik N Poinar; Carsten Schwarz; Ji Qi; Beth Shapiro; Ross D E Macphee; Bernard Buigues; Alexei Tikhonov; Daniel H Huson; Lynn P Tomsho; Alexander Auch; Markus Rampp; Webb Miller; Stephan C Schuster
Journal:  Science       Date:  2005-12-20       Impact factor: 47.728

6.  DNA N-glycosidases: properties of uracil-DNA glycosidase from Escherichia coli.

Authors:  T Lindahl; S Ljungquist; W Siegert; B Nyberg; B Sperens
Journal:  J Biol Chem       Date:  1977-05-25       Impact factor: 5.157

7.  Mitochondrial DNA of an Iberian Neandertal suggests a population affinity with other European Neandertals.

Authors:  Carles Lalueza-Fox; Johannes Krause; David Caramelli; Giulio Catalano; Lucio Milani; María Lourdes Sampietro; Francesc Calafell; Cayetana Martínez-Maza; Markus Bastir; Antonio García-Tabernero; Marco de la Rasilla; Javier Fortea; Svante Pääbo; Jaume Bertranpetit; Antonio Rosas
Journal:  Curr Biol       Date:  2006-08-22       Impact factor: 10.834

8.  A late Neandertal femur from Les Rochers-de-Villeneuve, France.

Authors:  Cédric Beauval; Bruno Maureille; François Lacrampe-Cuyaubère; David Serre; David Peressinotto; Jean-Guillaume Bordes; David Cochard; Isabelle Couchoud; David Dubrasquet; Véronique Laroulandie; Arnaud Lenoble; Jean-Baptiste Mallye; Sylvain Pasty; Jérôme Primault; Nadin Rohland; Svante Pääbo; Erik Trinkaus
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-06       Impact factor: 11.205

Review 9.  Brain size and encephalization in early to Mid-Pleistocene Homo.

Authors:  G Philip Rightmire
Journal:  Am J Phys Anthropol       Date:  2004-06       Impact factor: 2.868

10.  No evidence of Neandertal mtDNA contribution to early modern humans.

Authors:  David Serre; André Langaney; Mario Chech; Maria Teschler-Nicola; Maja Paunovic; Philippe Mennecier; Michael Hofreiter; Göran Possnert; Svante Pääbo
Journal:  PLoS Biol       Date:  2004-03-16       Impact factor: 8.029

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  437 in total

1.  Specific inactivation of two immunomodulatory SIGLEC genes during human evolution.

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

2.  Polymorphic NumtS trace human population relationships.

Authors:  Martin Lang; Marco Sazzini; Francesco Maria Calabrese; Domenico Simone; Alessio Boattini; Giovanni Romeo; Donata Luiselli; Marcella Attimonelli; Giuseppe Gasparre
Journal:  Hum Genet       Date:  2011-12-08       Impact factor: 4.132

3.  The existence of species rests on a metastable equilibrium between inbreeding and outbreeding. An essay on the close relationship between speciation, inbreeding and recessive mutations.

Authors:  Etienne Joly
Journal:  Biol Direct       Date:  2011-12-09       Impact factor: 4.540

4.  Rejection of a serial founder effects model of genetic and linguistic coevolution.

Authors:  Keith Hunley; Claire Bowern; Meghan Healy
Journal:  Proc Biol Sci       Date:  2012-02-01       Impact factor: 5.349

5.  Mitochondrial DNA and Y chromosome variation provides evidence for a recent common ancestry between Native Americans and Indigenous Altaians.

Authors:  Matthew C Dulik; Sergey I Zhadanov; Ludmila P Osipova; Ayken Askapuli; Lydia Gau; Omer Gokcumen; Samara Rubinstein; Theodore G Schurr
Journal:  Am J Hum Genet       Date:  2012-01-25       Impact factor: 11.025

6.  A simple method for finding explicit analytic transition densities of diffusion processes with general diploid selection.

Authors:  Yun S Song; Matthias Steinrücken
Journal:  Genetics       Date:  2011-12-29       Impact factor: 4.562

Review 7.  Molecular phylogenetics: principles and practice.

Authors:  Ziheng Yang; Bruce Rannala
Journal:  Nat Rev Genet       Date:  2012-03-28       Impact factor: 53.242

8.  Human occupation of northern Australia by 65,000 years ago.

Authors:  Chris Clarkson; Zenobia Jacobs; Ben Marwick; Richard Fullagar; Lynley Wallis; Mike Smith; Richard G Roberts; Elspeth Hayes; Kelsey Lowe; Xavier Carah; S Anna Florin; Jessica McNeil; Delyth Cox; Lee J Arnold; Quan Hua; Jillian Huntley; Helen E A Brand; Tiina Manne; Andrew Fairbairn; James Shulmeister; Lindsey Lyle; Makiah Salinas; Mara Page; Kate Connell; Gayoung Park; Kasih Norman; Tessa Murphy; Colin Pardoe
Journal:  Nature       Date:  2017-07-19       Impact factor: 49.962

Review 9.  Human brain evolution: transcripts, metabolites and their regulators.

Authors:  Mehmet Somel; Xiling Liu; Philipp Khaitovich
Journal:  Nat Rev Neurosci       Date:  2013-01-17       Impact factor: 34.870

10.  Analysis of Human Sequence Data Reveals Two Pulses of Archaic Denisovan Admixture.

Authors:  Sharon R Browning; Brian L Browning; Ying Zhou; Serena Tucci; Joshua M Akey
Journal:  Cell       Date:  2018-03-15       Impact factor: 41.582

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