Literature DB >> 21179060

Open chromatin in pluripotency and reprogramming.

Alexandre Gaspar-Maia1, Adi Alajem2, Eran Meshorer2, Miguel Ramalho-Santos1.   

Abstract

Pluripotent stem cells can be derived from embryos or induced from adult cells by reprogramming. They are unique among stem cells in that they can give rise to all cell types of the body. Recent findings indicate that a particularly 'open' chromatin state contributes to maintenance of pluripotency. Two principles are emerging: specific factors maintain a globally open chromatin state that is accessible for transcriptional activation; and other chromatin regulators contribute locally to the silencing of lineage-specific genes until differentiation is triggered. These same principles may apply during reacquisition of an open chromatin state upon reprogramming to pluripotency, and during de-differentiation in cancer.

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Year:  2011        PMID: 21179060      PMCID: PMC3891572          DOI: 10.1038/nrm3036

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  139 in total

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Journal:  Nat Rev Mol Cell Biol       Date:  2001-01       Impact factor: 94.444

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Journal:  Genes Dev       Date:  2002-02-15       Impact factor: 11.361

3.  A Brg1 null mutation in the mouse reveals functional differences among mammalian SWI/SNF complexes.

Authors:  S Bultman; T Gebuhr; D Yee; C La Mantia; J Nicholson; A Gilliam; F Randazzo; D Metzger; P Chambon; G Crabtree; T Magnuson
Journal:  Mol Cell       Date:  2000-12       Impact factor: 17.970

Review 4.  Stem cells, cancer, and cancer stem cells.

Authors:  T Reya; S J Morrison; M F Clarke; I L Weissman
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

5.  Formation of germ-line chimaeras from embryo-derived teratocarcinoma cell lines.

Authors:  A Bradley; M Evans; M H Kaufman; E Robertson
Journal:  Nature       Date:  1984 May 17-23       Impact factor: 49.962

6.  The murine SNF5/INI1 chromatin remodeling factor is essential for embryonic development and tumor suppression.

Authors:  A Klochendler-Yeivin; L Fiette; J Barra; C Muchardt; C Babinet; M Yaniv
Journal:  EMBO Rep       Date:  2000-12       Impact factor: 8.807

7.  Disruption of Trrap causes early embryonic lethality and defects in cell cycle progression.

Authors:  Z Herceg; W Hulla; D Gell; C Cuenin; M Lleonart; S Jackson; Z Q Wang
Journal:  Nat Genet       Date:  2001-10       Impact factor: 38.330

8.  Down-regulation of HP1Hsalpha expression is associated with the metastatic phenotype in breast cancer.

Authors:  D A Kirschmann; R A Lininger; L M Gardner; E A Seftor; V A Odero; A M Ainsztein; W C Earnshaw; L L Wallrath; M J Hendrix
Journal:  Cancer Res       Date:  2000-07-01       Impact factor: 12.701

9.  Srg3, a mouse homolog of yeast SWI3, is essential for early embryogenesis and involved in brain development.

Authors:  J K Kim; S O Huh; H Choi; K S Lee; D Shin; C Lee; J S Nam; H Kim; H Chung; H W Lee; S D Park; R H Seong
Journal:  Mol Cell Biol       Date:  2001-11       Impact factor: 4.272

10.  Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells.

Authors:  G R Martin
Journal:  Proc Natl Acad Sci U S A       Date:  1981-12       Impact factor: 11.205

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  243 in total

1.  Genome-Wide Studies Reveal that H3K4me3 Modification in Bivalent Genes Is Dynamically Regulated during the Pluripotent Cell Cycle and Stabilized upon Differentiation.

Authors:  Rodrigo A Grandy; Troy W Whitfield; Hai Wu; Mark P Fitzgerald; Jennifer J VanOudenhove; Sayyed K Zaidi; Martin A Montecino; Jane B Lian; André J van Wijnen; Janet L Stein; Gary S Stein
Journal:  Mol Cell Biol       Date:  2015-12-07       Impact factor: 4.272

Review 2.  Role of H1 linker histones in mammalian development and stem cell differentiation.

Authors:  Chenyi Pan; Yuhong Fan
Journal:  Biochim Biophys Acta       Date:  2015-12-13

Review 3.  Chromatin regulation at the frontier of synthetic biology.

Authors:  Albert J Keung; J Keith Joung; Ahmad S Khalil; James J Collins
Journal:  Nat Rev Genet       Date:  2015-02-10       Impact factor: 53.242

4.  The polycomb protein Ezh2 impacts on induced pluripotent stem cell generation.

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Journal:  Stem Cells Dev       Date:  2014-01-21       Impact factor: 3.272

5.  Stem cells: Regulation by alternative splicing.

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Journal:  Nature       Date:  2013-06-05       Impact factor: 49.962

6.  Telomere dysfunction cooperates with epigenetic alterations to impair murine embryonic stem cell fate commitment.

Authors:  Aditi Qamra; Tsz Wai Chu; Mélanie Criqui; Monika Sharma; Julissa Tsao; Danielle A Henry; Dalia Barsyte-Lovejoy; Cheryl H Arrowsmith; Neil Winegarden; Mathieu Lupien; Lea Harrington
Journal:  Elife       Date:  2020-04-16       Impact factor: 8.140

Review 7.  Mechanisms underlying the formation of induced pluripotent stem cells.

Authors:  Federico González; Danwei Huangfu
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2015-09-18       Impact factor: 5.814

Review 8.  Stacking the DEK: from chromatin topology to cancer stem cells.

Authors:  Lisa M Privette Vinnedge; Ferdinand Kappes; Nicolas Nassar; Susanne I Wells
Journal:  Cell Cycle       Date:  2012-12-19       Impact factor: 4.534

9.  Jmjd3 inhibits reprogramming by upregulating expression of INK4a/Arf and targeting PHF20 for ubiquitination.

Authors:  Wei Zhao; Qingtian Li; Stephen Ayers; Yifeng Gu; Zhong Shi; Qingyuan Zhu; Yidong Chen; Helen Y Wang; Rong-Fu Wang
Journal:  Cell       Date:  2013-02-28       Impact factor: 41.582

10.  The epigenome of AML stem and progenitor cells.

Authors:  Jumpei Yamazaki; Marcos R Estecio; Yue Lu; Hai Long; Gabriel G Malouf; David Graber; Yujia Huo; Louis Ramagli; Shoudan Liang; Steven M Kornblau; Jaroslav Jelinek; Jean-Pierre J Issa
Journal:  Epigenetics       Date:  2012-12-18       Impact factor: 4.528

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