Literature DB >> 21177937

Molecular population genetics and selection in the glycolytic pathway.

Walter F Eanes1.   

Abstract

In this review, I discuss the evidence for differential natural selection acting across enzymes in the glycolytic pathway in Drosophila. Across the genome, genes evolve at very different rates and possess markedly varying levels of molecular polymorphism, codon bias and expression variation. Discovering the underlying causes of this variation has been a challenge in evolutionary biology. It has been proposed that both the intrinsic properties of enzymes and their pathway position have direct effects on their molecular evolution, and with the genomic era the study of adaptation has been taken to the level of pathways and networks of genes and their products. Of special interest have been the energy-producing pathways. Using both population genetic and experimental approaches, our laboratory has been engaged in a study of molecular variation across the glycolytic pathway in Drosophila melanogaster and its close relatives. We have observed a pervasive pattern in which genes at the top of the pathway, especially around the intersection at glucose 6-phosphate, show evidence for both contemporary selection, in the form of latitudinal allele clines, and inter-specific selection, in the form of elevated levels of amino acid substitutions between species. To further explore this question, future work will require corroboration in other species, expansion into tangential pathways, and experimental work to better characterize metabolic control through the pathway and to examine the pleiotropic effects of these genes on other traits and fitness components.

Entities:  

Mesh:

Year:  2011        PMID: 21177937      PMCID: PMC3183487          DOI: 10.1242/jeb.046458

Source DB:  PubMed          Journal:  J Exp Biol        ISSN: 0022-0949            Impact factor:   3.312


  74 in total

Review 1.  Molecular-functional studies of adaptive genetic variation in prokaryotes and eukaryotes.

Authors:  W B Watt; A M Dean
Journal:  Annu Rev Genet       Date:  2000       Impact factor: 16.830

2.  Adaptive evolution of a candidate gene for aging in Drosophila.

Authors:  P S Schmidt; D D Duvernell; W F Eanes
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-26       Impact factor: 11.205

3.  Extensive amino acid polymorphism at the pgm locus is consistent with adaptive protein evolution in Drosophila melanogaster.

Authors:  B C Verrelli; W F Eanes
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

4.  Clinal variation for amino acid polymorphisms at the Pgm locus in Drosophila melanogaster.

Authors:  B C Verrelli; W F Eanes
Journal:  Genetics       Date:  2001-04       Impact factor: 4.562

5.  The functional impact of Pgm amino acid polymorphism on glycogen content in Drosophila melanogaster.

Authors:  B C Verrelli; W F Eanes
Journal:  Genetics       Date:  2001-09       Impact factor: 4.562

6.  Contrasting molecular population genetics of four hexokinases in Drosophila melanogaster, D. simulans and D. yakuba.

Authors:  D D Duvernell; W F Eanes
Journal:  Genetics       Date:  2000-11       Impact factor: 4.562

7.  Nonclinality of molecular variation implicates selection in maintaining a morphological cline of Drosophila melanogaster.

Authors:  J Gockel; W J Kennington; A Hoffmann; D B Goldstein; L Partridge
Journal:  Genetics       Date:  2001-05       Impact factor: 4.562

8.  Levels of variation in stress resistance in drosophila among strains, local populations, and geographic regions: patterns for desiccation, starvation, cold resistance, and associated traits.

Authors:  A A Hoffmann; R Hallas; C Sinclair; P Mitrovski
Journal:  Evolution       Date:  2001-08       Impact factor: 3.694

9.  The crystal structure of a multifunctional protein: phosphoglucose isomerase/autocrine motility factor/neuroleukin.

Authors:  Y J Sun; C C Chou; W S Chen; R T Wu; M Meng; C D Hsiao
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-11       Impact factor: 11.205

10.  The genome sequence of Drosophila melanogaster.

Authors:  M D Adams; S E Celniker; R A Holt; C A Evans; J D Gocayne; P G Amanatides; S E Scherer; P W Li; R A Hoskins; R F Galle; R A George; S E Lewis; S Richards; M Ashburner; S N Henderson; G G Sutton; J R Wortman; M D Yandell; Q Zhang; L X Chen; R C Brandon; Y H Rogers; R G Blazej; M Champe; B D Pfeiffer; K H Wan; C Doyle; E G Baxter; G Helt; C R Nelson; G L Gabor; J F Abril; A Agbayani; H J An; C Andrews-Pfannkoch; D Baldwin; R M Ballew; A Basu; J Baxendale; L Bayraktaroglu; E M Beasley; K Y Beeson; P V Benos; B P Berman; D Bhandari; S Bolshakov; D Borkova; M R Botchan; J Bouck; P Brokstein; P Brottier; K C Burtis; D A Busam; H Butler; E Cadieu; A Center; I Chandra; J M Cherry; S Cawley; C Dahlke; L B Davenport; P Davies; B de Pablos; A Delcher; Z Deng; A D Mays; I Dew; S M Dietz; K Dodson; L E Doup; M Downes; S Dugan-Rocha; B C Dunkov; P Dunn; K J Durbin; C C Evangelista; C Ferraz; S Ferriera; W Fleischmann; C Fosler; A E Gabrielian; N S Garg; W M Gelbart; K Glasser; A Glodek; F Gong; J H Gorrell; Z Gu; P Guan; M Harris; N L Harris; D Harvey; T J Heiman; J R Hernandez; J Houck; D Hostin; K A Houston; T J Howland; M H Wei; C Ibegwam; M Jalali; F Kalush; G H Karpen; Z Ke; J A Kennison; K A Ketchum; B E Kimmel; C D Kodira; C Kraft; S Kravitz; D Kulp; Z Lai; P Lasko; Y Lei; A A Levitsky; J Li; Z Li; Y Liang; X Lin; X Liu; B Mattei; T C McIntosh; M P McLeod; D McPherson; G Merkulov; N V Milshina; C Mobarry; J Morris; A Moshrefi; S M Mount; M Moy; B Murphy; L Murphy; D M Muzny; D L Nelson; D R Nelson; K A Nelson; K Nixon; D R Nusskern; J M Pacleb; M Palazzolo; G S Pittman; S Pan; J Pollard; V Puri; M G Reese; K Reinert; K Remington; R D Saunders; F Scheeler; H Shen; B C Shue; I Sidén-Kiamos; M Simpson; M P Skupski; T Smith; E Spier; A C Spradling; M Stapleton; R Strong; E Sun; R Svirskas; C Tector; R Turner; E Venter; A H Wang; X Wang; Z Y Wang; D A Wassarman; G M Weinstock; J Weissenbach; S M Williams; K C Worley; D Wu; S Yang; Q A Yao; J Ye; R F Yeh; J S Zaveri; M Zhan; G Zhang; Q Zhao; L Zheng; X H Zheng; F N Zhong; W Zhong; X Zhou; S Zhu; X Zhu; H O Smith; R A Gibbs; E W Myers; G M Rubin; J C Venter
Journal:  Science       Date:  2000-03-24       Impact factor: 47.728

View more
  28 in total

1.  Genetic perturbation of key central metabolic genes extends lifespan in Drosophila and affects response to dietary restriction.

Authors:  Matthew E Talbert; Brittany Barnett; Robert Hoff; Maria Amella; Kate Kuczynski; Erik Lavington; Spencer Koury; Evgeny Brud; Walter F Eanes
Journal:  Proc Biol Sci       Date:  2015-09-22       Impact factor: 5.349

Review 2.  Experimental approaches to evaluate the contributions of candidate protein-coding mutations to phenotypic evolution.

Authors:  Jay F Storz; Anthony J Zera
Journal:  Methods Mol Biol       Date:  2011

3.  Evolution of flux control in the glucosinolate pathway in Arabidopsis thaliana.

Authors:  Carrie F Olson-Manning; Cheng-Ruei Lee; Mark D Rausher; Thomas Mitchell-Olds
Journal:  Mol Biol Evol       Date:  2012-08-25       Impact factor: 16.240

4.  A small system--high-resolution study of metabolic adaptation in the central metabolic pathway to temperate climates in Drosophila melanogaster.

Authors:  Erik Lavington; Rodrigo Cogni; Caitlin Kuczynski; Spencer Koury; Emily L Behrman; Katherine R O'Brien; Paul S Schmidt; Walter F Eanes
Journal:  Mol Biol Evol       Date:  2014-04-24       Impact factor: 16.240

5.  Cold adaptation increases rates of nutrient flow and metabolic plasticity during cold exposure in Drosophila melanogaster.

Authors:  Caroline M Williams; Marshall D McCue; Nishanth E Sunny; Andre Szejner-Sigal; Theodore J Morgan; David B Allison; Daniel A Hahn
Journal:  Proc Biol Sci       Date:  2016-09-14       Impact factor: 5.349

Review 6.  New views on the selection acting on genetic polymorphism in central metabolic genes.

Authors:  Walter F Eanes
Journal:  Ann N Y Acad Sci       Date:  2016-11-10       Impact factor: 5.691

7.  Altitudinal clinal variation in wing size and shape in African Drosophila melanogaster: one cline or many?

Authors:  William Pitchers; John E Pool; Ian Dworkin
Journal:  Evolution       Date:  2012-09-07       Impact factor: 3.694

8.  Natural selection mediated association of the Duffy (FY) gene polymorphisms with Plasmodium vivax malaria in India.

Authors:  Anita Chittoria; Sujata Mohanty; Yogesh Kumar Jaiswal; Aparup Das
Journal:  PLoS One       Date:  2012-09-21       Impact factor: 3.240

9.  Evolutionary patterns of carbohydrate transport and metabolism in Halomonas boliviensis as derived from its genome sequence: influences on polyester production.

Authors:  Daniel Guzmán; Andrea Balderrama-Subieta; Carla Cardona-Ortuño; Mónica Guevara-Martínez; Nataly Callisaya-Quispe; Jorge Quillaguamán
Journal:  Aquat Biosyst       Date:  2012-04-17

10.  Evolutionary rate and duplicability in the Arabidopsis thaliana protein-protein interaction network.

Authors:  David Alvarez-Ponce; Mario A Fares
Journal:  Genome Biol Evol       Date:  2012       Impact factor: 3.416

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.