Literature DB >> 21171918

New dimensionality reduction methods for the representation of high dimensional 'omics' data.

Christophe Bécavin1, Arndt Benecke.   

Abstract

'Omics' data have increased very rapidly in quantity and resolution, and are increasingly recognized as very valuable experimental observations in the systematic study of biological phenomena. The increase in availability, complexity and nonexpert interest in such data requires the urgent development of accurate and efficient dimensionality reduction and visualization techniques. To illustrate this need for new approaches we extensively discuss current methodology in terms of the limitations encountered. We then illustrate a recent example of how combinations of existing techniques can be used to overcome some of the present limitations, and discuss possible future directions for research in this important field of study.

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Year:  2011        PMID: 21171918     DOI: 10.1586/erm.10.95

Source DB:  PubMed          Journal:  Expert Rev Mol Diagn        ISSN: 1473-7159            Impact factor:   5.225


  5 in total

1.  Proteome and computational analyses reveal new insights into the mechanisms of hepatitis C virus-mediated liver disease posttransplantation.

Authors:  Deborah L Diamond; Alexei L Krasnoselsky; Kristin E Burnum; Matthew E Monroe; Bobbie-Jo Webb-Robertson; Jason E McDermott; Matthew M Yeh; Jose Felipe Golib Dzib; Nathan Susnow; Susan Strom; Sean C Proll; Sarah E Belisle; David E Purdy; Angela L Rasmussen; Kathie-Anne Walters; Jon M Jacobs; Marina A Gritsenko; David G Camp; Renuka Bhattacharya; James D Perkins; Robert L Carithers; Iris W Liou; Anne M Larson; Arndt Benecke; Katrina M Waters; Richard D Smith; Michael G Katze
Journal:  Hepatology       Date:  2012-04-24       Impact factor: 17.425

2.  1918 Influenza virus hemagglutinin (HA) and the viral RNA polymerase complex enhance viral pathogenicity, but only HA induces aberrant host responses in mice.

Authors:  Tokiko Watanabe; Jennifer Tisoncik-Go; Nicolas Tchitchek; Shinji Watanabe; Arndt G Benecke; Michael G Katze; Yoshihiro Kawaoka
Journal:  J Virol       Date:  2013-02-28       Impact factor: 5.103

3.  A chemokine gene expression signature derived from meta-analysis predicts the pathogenicity of viral respiratory infections.

Authors:  Stewart T Chang; Nicolas Tchitchek; Debashis Ghosh; Arndt Benecke; Michael G Katze
Journal:  BMC Syst Biol       Date:  2011-12-22

4.  Retinoic acid receptor α as a novel contributor to adrenal cortex structure and function through interactions with Wnt and Vegfa signalling.

Authors:  Rami M El Zein; Audrey H Soria; Jose Felipe Golib Dzib; Amanda J Rickard; Fabio L Fernandes-Rosa; Benoit Samson-Couterie; Isabelle Giscos-Douriez; Angélique Rocha; Marko Poglitsch; Celso E Gomez-Sanchez; Laurence Amar; Norbert B Ghyselinck; Arndt Benecke; Maria-Christina Zennaro; Sheerazed Boulkroun
Journal:  Sci Rep       Date:  2019-10-11       Impact factor: 4.379

Review 5.  Systems virology: host-directed approaches to viral pathogenesis and drug targeting.

Authors:  G Lynn Law; Marcus J Korth; Arndt G Benecke; Michael G Katze
Journal:  Nat Rev Microbiol       Date:  2013-06-03       Impact factor: 60.633

  5 in total

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