Literature DB >> 21171864

Barcoding, types and the Hirudo files: using information content to critically evaluate the identity of DNA barcodes.

Sebastian Kvist1, Alejandro Oceguera-Figueroa, Mark E Siddall, Christer Erséus.   

Abstract

Species identifications based on DNA barcoding rely on the correct identity of previously barcoded specimens, but little attention has been given to whether deposited barcodes include correspondence to the species' name-bearing type. The information content associated with COX1 sequences in the two most commonly used repositories of barcodes, GenBank and the Barcode of Life Data System (BOLD), is often insufficient for subsequent evaluation of the robustness of the identification procedure. We argue that DNA barcoding and taxonomy alike will benefit from more information content in the annotations of barcoded specimens as this will allow for validation and re-evaluation of the initial specimen identification. The aim should be to closely connect specimens from which reference barcodes are generated with the holotype through straight-forward taxonomy, and geographical and genetic correlations. Annotated information should also include voucher specimens and collector/identifier information. We examine two case studies based on empirical data, in which barcoding and taxonomy benefit from increased information content. On the basis of data from the first case study, we designate a barcoded neotype of the European medicinal leech, Hirudo medicinalis, on morphological and geographical grounds.

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Year:  2010        PMID: 21171864     DOI: 10.3109/19401736.2010.529905

Source DB:  PubMed          Journal:  Mitochondrial DNA        ISSN: 1940-1736


  5 in total

1.  A new species of medicinal leech in the genus Hirudo Linnaeus, 1758 (Hirudiniformes, Hirudinidae) from Tianjin City, China.

Authors:  Hao Wang; Fan-Ming Meng; Si-Jie Jin; Jiang-Wei Gao; Xiang-Rong Tong; Zi-Chao Liu
Journal:  Zookeys       Date:  2022-04-13       Impact factor: 1.492

2.  Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform.

Authors:  Shadi Shokralla; Teresita M Porter; Joel F Gibson; Rafal Dobosz; Daniel H Janzen; Winnie Hallwachs; G Brian Golding; Mehrdad Hajibabaei
Journal:  Sci Rep       Date:  2015-04-17       Impact factor: 4.379

3.  Evaluating the Utility of Single-Locus DNA Barcoding for the Identification of Ribbon Worms (Phylum Nemertea).

Authors:  Per Sundberg; Sebastian Kvist; Malin Strand
Journal:  PLoS One       Date:  2016-05-12       Impact factor: 3.240

4.  Opening the treasure chest: A DNA-barcoding primer set for most higher taxa of Central European birds and mammals from museum collections.

Authors:  Sylvia Schäffer; Frank E Zachos; Stephan Koblmüller
Journal:  PLoS One       Date:  2017-03-30       Impact factor: 3.240

5.  Draft genome of the European medicinal leech Hirudo medicinalis (Annelida, Clitellata, Hirudiniformes) with emphasis on anticoagulants.

Authors:  Sebastian Kvist; Alejandro Manzano-Marín; Danielle de Carle; Peter Trontelj; Mark E Siddall
Journal:  Sci Rep       Date:  2020-06-18       Impact factor: 4.379

  5 in total

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