Literature DB >> 21170175

Investigating and Annotating the Role of Citation in Biomedical Full-Text Articles.

Hong Yu1, Shashank Agarwal, Nadya Frid.   

Abstract

Citations are ubiquitous in scientific articles and play important roles for representing the semantic content of a full-text biomedical article. In this work, we manually examined full-text biomedical articles to analyze the semantic content of citations in full-text biomedical articles. After developing a citation relation schema and annotation guideline, our pilot annotation results show an overall agreement of 0.71, and here we report on the research challenges and the lessons we've learned while trying to overcome them. Our work is a first step toward automatic citation classification in full-text biomedical articles, which may contribute to many text mining tasks, including information retrieval, extraction, summarization, and question answering.

Entities:  

Year:  2009        PMID: 21170175      PMCID: PMC3003334          DOI: 10.1109/BIBMW.2009.5332080

Source DB:  PubMed          Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)        ISSN: 2156-1125


  13 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-19       Impact factor: 11.205

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Authors:  Lisa McKerracher
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

3.  Using argumentation to retrieve articles with similar citations: an inquiry into improving related articles search in the MEDLINE digital library.

Authors:  Imad Tbahriti; Christine Chichester; Frédérique Lisacek; Patrick Ruch
Journal:  Int J Med Inform       Date:  2005-09-13       Impact factor: 4.046

4.  Anatomy of energetic changes accompanying urea-induced protein denaturation.

Authors:  Matthew Auton; Luis Marcelo F Holthauzen; D Wayne Bolen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-18       Impact factor: 11.205

5.  First record of Eulaema helvola Moure (Hymenoptera: Apidae: Euglossina) for the State of Minas Gerais: biogeographic and taxonomic implications.

Authors:  André Nemésio; Fernando A Silveira
Journal:  Neotrop Entomol       Date:  2006 May-Jun       Impact factor: 1.434

6.  Nop53p is required for late 60S ribosome subunit maturation and nuclear export in yeast.

Authors:  Emma Thomson; David Tollervey
Journal:  RNA       Date:  2005-08       Impact factor: 4.942

7.  Citation analysis as a tool in journal evaluation.

Authors:  E Garfield
Journal:  Science       Date:  1972-11-03       Impact factor: 47.728

8.  Atrial natriuretic peptides elevate cyclic GMP levels in primary cultures of rat ependymal cells.

Authors:  John Wellard; Mirna Rapp; Bernd Hamprecht; Stephan Verleysdonk
Journal:  Neurochem Res       Date:  2003-02       Impact factor: 3.996

9.  Correction of factor IX deficiency in mice by embryonic stem cells differentiated in vitro.

Authors:  Jeffrey H Fair; Bruce A Cairns; Michael A Lapaglia; Montserrat Caballero; W Andrew Pleasant; Seigo Hatada; Hyung-Suk Kim; Tong Gui; Larysa Pevny; Anthony A Meyer; Darrel W Stafford; Oliver Smithies; Jeffrey A Frelinger
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-07       Impact factor: 11.205

10.  alpha1-Antitrypsin monotherapy induces immune tolerance during islet allograft transplantation in mice.

Authors:  Eli C Lewis; Mark Mizrahi; Michel Toledano; Nathaniel Defelice; Joanne L Wright; Andrew Churg; Leland Shapiro; Charles A Dinarello
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

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  1 in total

1.  Automatically classifying the role of citations in biomedical articles.

Authors:  Shashank Agarwal; Lisha Choubey; Hong Yu
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13
  1 in total

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