Literature DB >> 21164479

Emerging properties of animal gene regulatory networks.

Eric H Davidson1.   

Abstract

Gene regulatory networks (GRNs) provide system level explanations of developmental and physiological functions in the terms of the genomic regulatory code. Depending on their developmental functions, GRNs differ in their degree of hierarchy, and also in the types of modular sub-circuit of which they are composed, although there is a commonly employed sub-circuit repertoire. Mathematical modelling of some types of GRN sub-circuit has deepened biological understanding of the functions they mediate. The structural organization of various kinds of GRN reflects their roles in the life process, and causally illuminates both developmental and evolutionary process.

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Year:  2010        PMID: 21164479      PMCID: PMC3967874          DOI: 10.1038/nature09645

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  89 in total

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Authors:  L Sánchez; D Thieffry
Journal:  J Theor Biol       Date:  2001-07-21       Impact factor: 2.691

Review 2.  Control of cardiac development by an evolutionarily conserved transcriptional network.

Authors:  Richard M Cripps; Eric N Olson
Journal:  Dev Biol       Date:  2002-06-01       Impact factor: 3.582

3.  Myeloid or lymphoid promiscuity as a critical step in hematopoietic lineage commitment.

Authors:  Toshihiro Miyamoto; Hiromi Iwasaki; Boris Reizis; Min Ye; Thomas Graf; Irving L Weissman; Koichi Akashi
Journal:  Dev Cell       Date:  2002-07       Impact factor: 12.270

4.  Functional cross-antagonism between transcription factors FLI-1 and EKLF.

Authors:  Joëlle Starck; Nathalie Cohet; Colette Gonnet; Sandrine Sarrazin; Zina Doubeikovskaia; Alexandre Doubeikovski; Alexis Verger; Martine Duterque-Coquillaud; François Morle
Journal:  Mol Cell Biol       Date:  2003-02       Impact factor: 4.272

5.  Transcriptional regulatory cascades in development: initial rates, not steady state, determine network kinetics.

Authors:  Hamid Bolouri; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-25       Impact factor: 11.205

6.  High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development.

Authors:  Stefan C Materna; Jongmin Nam; Eric H Davidson
Journal:  Gene Expr Patterns       Date:  2010-04-14       Impact factor: 1.224

Review 7.  An integrated view of precambrian eumetazoan evolution.

Authors:  E H Davidson; D H Erwin
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2010-04-07

8.  Dynamic assignment and maintenance of positional identity in the ventral neural tube by the morphogen sonic hedgehog.

Authors:  Eric Dessaud; Vanessa Ribes; Nikolaos Balaskas; Lin Lin Yang; Alessandra Pierani; Anna Kicheva; Bennett G Novitch; James Briscoe; Noriaki Sasai
Journal:  PLoS Biol       Date:  2010-06-01       Impact factor: 8.029

9.  Response delays and the structure of transcription networks.

Authors:  Nitzan Rosenfeld; Uri Alon
Journal:  J Mol Biol       Date:  2003-06-13       Impact factor: 5.469

10.  The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster.

Authors:  Réka Albert; Hans G Othmer
Journal:  J Theor Biol       Date:  2003-07-07       Impact factor: 2.691

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  210 in total

Review 1.  Reconstructing regulatory network transitions.

Authors:  Jalean J Petricka; Philip N Benfey
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2.  Some considerations about a report on 'Public health in an era of genomic-based and personalized medicine' from the Public Health Foundation, Cambridge.

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Journal:  J Community Genet       Date:  2011-02-19

Review 3.  Building muscle: molecular regulation of myogenesis.

Authors:  C Florian Bentzinger; Yu Xin Wang; Michael A Rudnicki
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-02-01       Impact factor: 10.005

4.  Cardiac expression of ms1/STARS, a novel gene involved in cardiac development and disease, is regulated by GATA4.

Authors:  Samir Ounzain; Satoru Kobayashi; Richard E Peterson; Aibin He; Anna Motterle; Nilesh J Samani; Donald R Menick; William T Pu; Qiangrong Liang; Nelson W Chong
Journal:  Mol Cell Biol       Date:  2012-03-19       Impact factor: 4.272

5.  The orchestration of mammalian tissue morphogenesis through a series of coherent feed-forward loops.

Authors:  Qing Xie; Ales Cvekl
Journal:  J Biol Chem       Date:  2011-10-13       Impact factor: 5.157

6.  A comprehensive analysis of Delta signaling in pre-gastrular sea urchin embryos.

Authors:  Stefan C Materna; Eric H Davidson
Journal:  Dev Biol       Date:  2012-01-27       Impact factor: 3.582

7.  Developmental biologist Eric H. Davidson, 1937-2015.

Authors:  Leroy Hood; Ellen V Rothenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-23       Impact factor: 11.205

Review 8.  A new paradigm for animal symmetry.

Authors:  Gábor Holló
Journal:  Interface Focus       Date:  2015-12-06       Impact factor: 3.906

Review 9.  Epigenetic inheritance of acquired traits through sperm RNAs and sperm RNA modifications.

Authors:  Qi Chen; Wei Yan; Enkui Duan
Journal:  Nat Rev Genet       Date:  2016-10-03       Impact factor: 53.242

10.  Human Sex Determination at the Edge of Ambiguity: INHERITED XY SEX REVERSAL DUE TO ENHANCED UBIQUITINATION AND PROTEASOMAL DEGRADATION OF A MASTER TRANSCRIPTION FACTOR.

Authors:  Joseph D Racca; Yen-Shan Chen; Yanwu Yang; Nelson B Phillips; Michael A Weiss
Journal:  J Biol Chem       Date:  2016-08-30       Impact factor: 5.157

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