Literature DB >> 21161277

Expressed sequence tags from Eimeria brunetti--preliminary analysis and functional annotation.

S Aarthi1, Gopal Dhinakar Raj, M Raman, Damer Blake, Chandra Subramaniam, Fiona Tomley.   

Abstract

As a first attempt to generate sequence information from the protein-coding genes of the genomically unknown parasite, Eimeria brunetti, a cDNA library was generated from purified sporozoites in the λTriplEx2™ vector. Analysis of 283 expressed sequence tags (ESTs) from the cDNA library constructed revealed 12 contigs (26 ESTs) and 257 singletons. BLASTx analysis revealed that 50 transcripts had significant matches to known proteins, whereas the remaining 233 had no significant matches, probably representing novel genes. Based on Gene Ontology classification, the transcripts were categorized as biological process (46 ESTs), molecular function (37 ESTs), and cellular component (19 ESTs). The transcripts analyzed show maximum homology to the apicomplexan parasite Toxoplasma gondii. Despite the small number of transcripts, this is the first transcriptome analysis of E. brunetti and provides preliminary data that will increase understanding of parasite biological function.

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Year:  2010        PMID: 21161277     DOI: 10.1007/s00436-010-2182-6

Source DB:  PubMed          Journal:  Parasitol Res        ISSN: 0932-0113            Impact factor:   2.289


  6 in total

1.  Expressed sequence tag analysis of adult Clonorchis sinensis, the Chinese liver fluke.

Authors:  Pyo Yun Cho; Mi Jung Lee; Tae Im Kim; Shin-Yong Kang; Sung-Jong Hong
Journal:  Parasitol Res       Date:  2006-05-17       Impact factor: 2.289

2.  Analysis of transcripts from intracellular stages of Eimeria acervulina using expressed sequence tags.

Authors:  K B Miska; R H Fetterer; G H Rosenberg
Journal:  J Parasitol       Date:  2008-04       Impact factor: 1.276

3.  Analysis of the gene expression profile of Schistosoma japonicum cercariae by a strategy based on expressed sequence tags.

Authors:  Hong-Juan Peng; Xiao-Guang Chen; Xun-Zhang Wang; Zhao-Rong Lun
Journal:  Parasitol Res       Date:  2003-03-26       Impact factor: 2.289

4.  Analysis of the genes expressed in Clonorchis sinensis adults using the expressed sequence tag approach.

Authors:  Ji-Sook Lee; Jongweon Lee; Soon-Jung Park; Tai-Soon Yong
Journal:  Parasitol Res       Date:  2003-08-22       Impact factor: 2.289

5.  Coccidian merozoite transcriptome analysis from Eimeria maxima in comparison to Eimeria tenella and Eimeria acervulina.

Authors:  Ryan S Schwarz; Raymond H Fetterer; George H Rosenberg; Katarzyna B Miska
Journal:  J Parasitol       Date:  2010-02       Impact factor: 1.276

6.  Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

Authors:  Ana Conesa; Stefan Götz; Juan Miguel García-Gómez; Javier Terol; Manuel Talón; Montserrat Robles
Journal:  Bioinformatics       Date:  2005-08-04       Impact factor: 6.937

  6 in total
  1 in total

1.  Transcriptome profiling of the fifth-stage larvae of Angiostrongylus cantonensis by next-generation sequencing.

Authors:  Lian-chen Wang; Kuang-yao Chen; Shih-hsin Chang; Li-yu Chung; Ruei-chi Richie Gan; Chien-ju Cheng; Petrus Tang
Journal:  Parasitol Res       Date:  2013-07-05       Impact factor: 2.289

  1 in total

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