Literature DB >> 21155523

Bacterial carbohydrate structure database 3: principles and realization.

Philip V Toukach1.   

Abstract

Bacterial carbohydrate structure database (BCSDB) is an open-access project that collects primary publication data on carbohydrate structures originating from bacteria, their biological properties, bibliographic and taxonomic annotations, NMR spectra, etc. Almost complete coverage and outstanding data consistency are achieved. BCSDB version 3 and the principles lying behind it, including glycan description language, are reported.

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Year:  2010        PMID： 21155523     DOI： 10.1021/ci100150d

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN： 1549-9596            Impact factor:   4.956


  18 in total

1.  GlycoRDF: an ontology to standardize glycomics data in RDF.

Authors:  Rene Ranzinger; Kiyoko F Aoki-Kinoshita; Matthew P Campbell; Shin Kawano; Thomas Lütteke; Shujiro Okuda; Daisuke Shinmachi; Toshihide Shikanai; Hiromichi Sawaki; Philip Toukach; Masaaki Matsubara; Issaku Yamada; Hisashi Narimatsu
Journal:  Bioinformatics       Date:  2014-11-11       Impact factor: 6.937

2.  The Third ACGG-DB Meeting Report: Towards an international collaborative infrastructure for glycobioinformatics.

Authors:  Kiyoko F Aoki-Kinoshita; Hiromichi Sawaki; Hyun Joo An; Jin Won Cho; Daniel Hsu; Masaki Kato; Shin Kawano; Toshisuke Kawasaki; Kay-Hooi Khoo; Jaehan Kim; Jin-Dong Kim; Xianyu Li; Thomas Lütteke; Shujiro Okuda; Nicolle H Packer; James C Paulson; Rahul Raman; René Ranzinger; Huali Shen; Toshihide Shikanai; Issaku Yamada; Pengyuan Yang; Yoshiki Yamaguchi; Wantao Ying; Jong Shin Yoo; Yang Zhang; Hisashi Narimatsu
Journal:  Glycobiology       Date:  2013-02       Impact factor: 4.313

3.  Toolboxes for a standardised and systematic study of glycans.

Authors:  Matthew P Campbell; René Ranzinger; Thomas Lütteke; Julien Mariethoz; Catherine A Hayes; Jingyu Zhang; Yukie Akune; Kiyoko F Aoki-Kinoshita; David Damerell; Giorgio Carta; Will S York; Stuart M Haslam; Hisashi Narimatsu; Pauline M Rudd; Niclas G Karlsson; Nicolle H Packer; Frédérique Lisacek
Journal:  BMC Bioinformatics       Date:  2014-01-10       Impact factor: 3.169

4.  Bacterial β-Kdo glycosyltransferases represent a new glycosyltransferase family (GT99).

Authors:  Olga G Ovchinnikova; Evan Mallette; Akihiko Koizumi; Todd L Lowary; Matthew S Kimber; Chris Whitfield
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-19       Impact factor: 11.205

5.  Qrator: a web-based curation tool for glycan structures.

Authors:  Matthew Eavenson; Krys J Kochut; John A Miller; René Ranzinger; Michael Tiemeyer; Kazuhiro Aoki; William S York
Journal:  Glycobiology       Date:  2014-08-27       Impact factor: 4.313

6.  ProGlycProt: a repository of experimentally characterized prokaryotic glycoproteins.

Authors:  Aadil H Bhat; Homchoru Mondal; Jagat S Chauhan; Gajendra P S Raghava; Amrish Methi; Alka Rao
Journal:  Nucleic Acids Res       Date:  2011-10-28       Impact factor: 16.971

7.  The use of glycoinformatics in glycochemistry.

Authors:  Thomas Lütteke
Journal:  Beilstein J Org Chem       Date:  2012-06-21       Impact factor: 2.883

Review 8.  Databases for Microbiologists.

Authors:  Igor B Zhulin
Journal:  J Bacteriol       Date:  2015-05-26       Impact factor: 3.490

9.  BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

Authors:  Toshiaki Katayama; Mark D Wilkinson; Kiyoko F Aoki-Kinoshita; Shuichi Kawashima; Yasunori Yamamoto; Atsuko Yamaguchi; Shinobu Okamoto; Shin Kawano; Jin-Dong Kim; Yue Wang; Hongyan Wu; Yoshinobu Kano; Hiromasa Ono; Hidemasa Bono; Simon Kocbek; Jan Aerts; Yukie Akune; Erick Antezana; Kazuharu Arakawa; Bruno Aranda; Joachim Baran; Jerven Bolleman; Raoul Jp Bonnal; Pier Luigi Buttigieg; Matthew P Campbell; Yi-An Chen; Hirokazu Chiba; Peter Ja Cock; K Bretonnel Cohen; Alexandru Constantin; Geraint Duck; Michel Dumontier; Takatomo Fujisawa; Toyofumi Fujiwara; Naohisa Goto; Robert Hoehndorf; Yoshinobu Igarashi; Hidetoshi Itaya; Maori Ito; Wataru Iwasaki; Matúš Kalaš; Takeo Katoda; Taehong Kim; Anna Kokubu; Yusuke Komiyama; Masaaki Kotera; Camille Laibe; Hilmar Lapp; Thomas Lütteke; M Scott Marshall; Takaaki Mori; Hiroshi Mori; Mizuki Morita; Katsuhiko Murakami; Mitsuteru Nakao; Hisashi Narimatsu; Hiroyo Nishide; Yosuke Nishimura; Johan Nystrom-Persson; Soichi Ogishima; Yasunobu Okamura; Shujiro Okuda; Kazuki Oshita; Nicki H Packer; Pjotr Prins; Rene Ranzinger; Philippe Rocca-Serra; Susanna Sansone; Hiromichi Sawaki; Sung-Ho Shin; Andrea Splendiani; Francesco Strozzi; Shu Tadaka; Philip Toukach; Ikuo Uchiyama; Masahito Umezaki; Rutger Vos; Patricia L Whetzel; Issaku Yamada; Chisato Yamasaki; Riu Yamashita; William S York; Christian M Zmasek; Shoko Kawamoto; Toshihisa Takagi
Journal:  J Biomed Semantics       Date:  2014-02-05

10.  Introducing glycomics data into the Semantic Web.

Authors:  Kiyoko F Aoki-Kinoshita; Jerven Bolleman; Matthew P Campbell; Shin Kawano; Jin-Dong Kim; Thomas Lütteke; Masaaki Matsubara; Shujiro Okuda; Rene Ranzinger; Hiromichi Sawaki; Toshihide Shikanai; Daisuke Shinmachi; Yoshinori Suzuki; Philip Toukach; Issaku Yamada; Nicolle H Packer; Hisashi Narimatsu
Journal:  J Biomed Semantics       Date:  2013-11-26
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