Literature DB >> 21148735

Genome sequence of Lactobacillus coryniformis subsp. coryniformis KCTC 3167.

Seong-Hyeuk Nam1, Sang-Haeng Choi, Aram Kang, Dong-Wook Kim, Dae-Soo Kim, Ryong Nam Kim, Aeri Kim, Hong-Seog Park.   

Abstract

Lactobacillus coryniformis subsp. coryniformis is known to be present during the manufacturing process of kimchi, the best-known traditional Korean dish. Here, we present the draft genome sequence of Lactobacillus coryniformis subsp. coryniformis type strain KCTC 3167 (2,964,752 bp, with a G+C content of 42.8%), which consists of 55 scaffolds.

Entities:  

Mesh:

Year:  2010        PMID: 21148735      PMCID: PMC3028671          DOI: 10.1128/JB.01394-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  12 in total

1.  The KEGG resource for deciphering the genome.

Authors:  Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Yasushi Okuno; Masahiro Hattori
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  Development and evaluation of genome-probing microarrays for monitoring lactic acid bacteria.

Authors:  Jin-Woo Bae; Sung-Keun Rhee; Ja Ryeong Park; Won-Hyong Chung; Young-Do Nam; Insun Lee; Hongik Kim; Yong-Ha Park
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

3.  Daily intake assessment of saccharin, stevioside, D-sorbitol and aspartame from various processed foods in Korea.

Authors:  M-S Chung; H-J Suh; W Yoo; S-H Choi; Y-J Cho; Y-H Cho; C-J Kim
Journal:  Food Addit Contam       Date:  2005-11

4.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  A rapid alkaline extraction procedure for screening recombinant plasmid DNA.

Authors:  H C Birnboim; J Doly
Journal:  Nucleic Acids Res       Date:  1979-11-24       Impact factor: 16.971

7.  Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.

Authors:  R D Fleischmann; M D Adams; O White; R A Clayton; E F Kirkness; A R Kerlavage; C J Bult; J F Tomb; B A Dougherty; J M Merrick
Journal:  Science       Date:  1995-07-28       Impact factor: 47.728

8.  The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.

Authors:  Konstantinos Liolios; I-Min A Chen; Konstantinos Mavromatis; Nektarios Tavernarakis; Philip Hugenholtz; Victor M Markowitz; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2009-11-13       Impact factor: 16.971

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.