Literature DB >> 21143210

Effects of the turn-back primer on intermediate product generation in isothermal DNA amplification.

Yuki Tanaka1, Yasumasa Kimura, Yasumasa Mitani, Yuki Kawai, Alexander Lezhava, Shohei Noma, Michihira Tagami, Jun Kawai, Yoshihide Hayashizaki, Kengo Usui.   

Abstract

In DNA amplification, the initial step of copying a target sequence from the template DNA--the so-called intermediate product generation step--is very important. In examining the turn-back primer (TP)-dependent isothermal DNA amplification (TIA) method, we determined the actual time point of intermediate product generation by extrapolating dsDNA amplification curves. Our results indicate that intermediate product creation is the rate-limiting step in TIA, and good TP design is advantageous for improving the intermediate production process.

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Year:  2010        PMID: 21143210     DOI: 10.2144/000113566

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  3 in total

1.  Lack of correlation between reaction speed and analytical sensitivity in isothermal amplification reveals the value of digital methods for optimization: validation using digital real-time RT-LAMP.

Authors:  Eugenia M Khorosheva; Mikhail A Karymov; David A Selck; Rustem F Ismagilov
Journal:  Nucleic Acids Res       Date:  2015-09-10       Impact factor: 16.971

2.  One-step detection of the 2009 pandemic influenza A(H1N1) virus by the RT-SmartAmp assay and its clinical validation.

Authors:  Yuki Kawai; Yasumasa Kimura; Alexander Lezhava; Hajime Kanamori; Kengo Usui; Takeshi Hanami; Takahiro Soma; Jean-Étienne Morlighem; Satomi Saga; Yuri Ishizu; Shintaro Aoki; Ryuta Endo; Atsuko Oguchi-Katayama; Yasushi Kogo; Yasumasa Mitani; Takefumi Ishidao; Chiharu Kawakami; Hideshi Kurata; Yumiko Furuya; Takayuki Saito; Norio Okazaki; Masatsugu Chikahira; Eiji Hayashi; Sei-ichi Tsuruoka; Tokumichi Toguchi; Yoshitomo Saito; Toshiaki Ban; Shinyu Izumi; Hideko Uryu; Koichiro Kudo; Yuko Sakai-Tagawa; Yoshihiro Kawaoka; Aizan Hirai; Yoshihide Hayashizaki; Toshihisa Ishikawa
Journal:  PLoS One       Date:  2012-01-25       Impact factor: 3.240

3.  Electric LAMP: Virtual Loop-Mediated Isothermal AMPlification.

Authors:  Nelson R Salinas; Damon P Little
Journal:  ISRN Bioinform       Date:  2012-11-21
  3 in total

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