Literature DB >> 21142579

True or false: all genes are rhythmic.

Andrey A Ptitsyn1, Jeffrey M Gimble.   

Abstract

Multiple microarray studies have documented the importance of circadian regulation of gene expression in different species under many experimental conditions. However, these reports often differ with respect to the identity and total number of oscillating genes. This review explores the interrelated questions of: How many genes are oscillating within individual tissues or systems? What are the forces that drive these oscillations? What are the methodological sources contributing to the discrepancy between estimates of gene oscillation? And finally, what are the physiological and systemic implications of oscillatory gene expression with respect to circadian molecular biology? Since this remains an evolving area of investigation, this hypothetical and speculative review also highlights the potential limitations faced by the current data in the literature relating to the novel paradigm(s) proposed.

Mesh:

Year:  2010        PMID: 21142579     DOI: 10.3109/07853890.2010.538078

Source DB:  PubMed          Journal:  Ann Med        ISSN: 0785-3890            Impact factor:   4.709


  12 in total

1.  Dynamics of oscillatory phenotypes in Saccharomyces cerevisiae reveal a network of genome-wide transcriptional oscillators.

Authors:  Shwe L Chin; Ian M Marcus; Robert R Klevecz; Caroline M Li
Journal:  FEBS J       Date:  2012-02-27       Impact factor: 5.542

2.  Prevalence of cycling genes and drug targets calls for prospective chronotherapeutics.

Authors:  Nimish D Kathale; Andrew C Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-03       Impact factor: 11.205

3.  A circadian gene expression atlas in mammals: implications for biology and medicine.

Authors:  Ray Zhang; Nicholas F Lahens; Heather I Ballance; Michael E Hughes; John B Hogenesch
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-27       Impact factor: 11.205

4.  The rat cerebral vasculature exhibits time-of-day-dependent oscillations in circadian clock genes and vascular function that are attenuated following obstructive sleep apnea.

Authors:  David J Durgan; Randy F Crossland; Robert M Bryan
Journal:  J Cereb Blood Flow Metab       Date:  2016-01-01       Impact factor: 6.200

Review 5.  Regulation of fatty acid metabolism by cell autonomous circadian clocks: time to fatten up on information?

Authors:  Molly S Bray; Martin E Young
Journal:  J Biol Chem       Date:  2011-02-04       Impact factor: 5.157

6.  Rhythms and synchronization patterns in gene expression in the Aedes aegypti mosquito.

Authors:  Andrey A Ptitsyn; Guadalupe Reyes-Solis; Karla Saavedra-Rodriguez; Jonathan Betz; Erica L Suchman; Jonathan O Carlson; William C Black
Journal:  BMC Genomics       Date:  2011-03-17       Impact factor: 3.969

7.  Confidence in Phase Definition for Periodicity in Genes Expression Time Series.

Authors:  Mohammed El Anbari; Abeer Fadda; Andrey Ptitsyn
Journal:  PLoS One       Date:  2015-07-10       Impact factor: 3.240

8.  Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response.

Authors:  Augustin Luna; Geoffrey B McFadden; Mirit I Aladjem; Kurt W Kohn
Journal:  PLoS Comput Biol       Date:  2015-05-28       Impact factor: 4.475

9.  The role of alternative Polyadenylation in regulation of rhythmic gene expression.

Authors:  Natalia Ptitsyna; Sabri Boughorbel; Mohammed El Anbari; Andrey Ptitsyn
Journal:  BMC Genomics       Date:  2017-08-04       Impact factor: 3.969

10.  Gene and genome parameters of mammalian liver circadian genes (LCGs).

Authors:  Gang Wu; Jiang Zhu; Fuhong He; Weiwei Wang; Songnian Hu; Jun Yu
Journal:  PLoS One       Date:  2012-10-10       Impact factor: 3.240

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