| Literature DB >> 21139866 |
Siân E Taylor1, Imran I Patel, Paras B Singh, Caroline M Nicholson, Helen F Stringfellow, R K Gopala Krishna, Shyam S Matanhelia, Pierre L Martin-Hirsch, Francis L Martin.
Abstract
Susceptibility to prostate or endometrial cancer is linked with obesity, a state of oestrogen excess. Oestrogen receptor (ER) splice variants may be responsible for the tissue-level of ER activity. Such micro-environmental regulation may modulate cancer initiation and/or progression mechanisms. Real-time reverse transcriptase (RT) polymerase chain reaction (PCR) was used to quantitatively assess the levels of four ER splice variants (ERαΔ3, ERαΔ5, ERβ2 and ERβ5), plus the full-length parent isoforms ERα and ERβ1, in high-risk [tumour-adjacent prostate (n = 10) or endometrial cancer (n = 9)] vs. low-risk [benign prostate (n = 12) or endometrium (n = 9)], as well as a comparison of UK (n = 12) vs. Indian (n = 15) benign prostate. All three tissue groups expressed the ER splice variants at similar levels, apart from ERαΔ5. This splice variant was markedly raised in all of the tumour-adjacent prostate samples compared to benign tissues. Immunofluorescence analysis for ERβ2 in prostate tissue demonstrated that such splice variants are present in comparable, if not greater, amounts as the parent full-length isoform. This small pilot study demonstrates the ubiquitous nature of ER splice variants in these tissue sites and suggests that ERαΔ5 may be involved in progression of prostate adenocarcinoma.Entities:
Keywords: endometrial cancer; oestrogen receptor; prostate cancer; real-time RT PCR; splice variant
Mesh:
Substances:
Year: 2010 PMID: 21139866 PMCID: PMC2996214 DOI: 10.3390/ijerph7113871
Source DB: PubMed Journal: Int J Environ Res Public Health ISSN: 1660-4601 Impact factor: 3.390
Primer sequences used for RT-PCR.
| Gene Symbol | Primer | Sequence (5′–3′) |
|---|---|---|
| TGG ACA GGA ACC AGG GAA AAT | ||
| GAG ATG ATG TAG CCA GCA GCA T | ||
| AGA AGT ATT CAA GGG ATA CGA AAA G | ||
| ATC ATC TCT CTG GCG CTT GT | ||
| AGG GTG CCA GGA ACC A | ||
| GAT GTA GCC AGC AGC ATG TC | ||
| TGT AAA CAG AGA GAC ACT GAA AAG GAA | ||
| CCT CTT TGA ACC TGG ACC AGT AA | ||
| GCA TGC GAG GGC AGA A | ||
| TTC TTT AGG CCA CCG AGT TG | ||
| CAC GGA GGG TGA AGT GAT TT | ||
| ATT CCA AAT GAG GCA TTC ATT | ||
| CCT GGC ACC CAG CAC AAT | ||
| GCC GAT CCA CAC GGA GTA CT | ||
F, forward primer; R, reverse primer.
Benign vs. tumour-adjacent endometrial tissue, mean CT values (corresponding β-ACTIN CT value).
| Code | ||||||
|---|---|---|---|---|---|---|
| N1 | 25.0 (19.2) | 30.6 (19.2) | 31.2 (19.2) | 33.9 (18.7) | 33.4 (18.7) | 37.0 (18.7) |
| N2 | 24.0 (19.2) | 30.0 (19.2) | 31.5 (19.2) | 32.8 (18.5) | 32.6 (18.5) | 35.1 (18.5) |
| N3 | 23.9 (19.4) | 28.6 (19.4) | 30.2 (19.4) | 34.1 (18.8) | 33.4 (18.8) | 36.9 (18.8) |
| TA1 | 24.7 (19.0) | 30.4 (19.0) | 31.9 (19.0) | 31.1 (18.7) | 32.9 (18.7) | 33.9 (18.7) |
| TA2 | 23.0 (17.7) | 28.3 (17.7) | 30.2 (17.7) | 32.4 (17.7) | 30.9 (17.7) | 34.6 (17.7) |
| TA3 | 24.4 (18.8) | 30.1 (18.8) | 31.2 (18.8) | 34.0 (18.8) | 32.7 (18.8) | 37.1 (18.8) |
| N4 | 26.4 (20.8) | 31.1 (20.8) | 31.5 (20.8) | 30.1 (19.4) | 33.5 (19.4) | 39.4 (19.4) |
| N5 | 29.0 (22.8) | 32.5 (22.8) | 33.7 (22.8) | 20.7 (21.3) | 34.5 (21.3) | 40.3 (21.3) |
| N6 | 26.0 (20.3) | 30.8 (20.3) | 30.8 (20.3) | 34.1 (19.0) | 33.7 (19.0) | 37.7 (19.0) |
| TA4 | 24.6 (20.2) | 29.6 (20.2) | 29.5 (20.2) | 24.7 (18.3) | 32.9 (18.3) | 34.3 (18.3) |
| TA5 | 24.3 (20.3) | 29.5 (20.3) | 29.8 (20.3) | 35.3 (18.6) | 33.4 (18.6) | 37.0 (18.6) |
| TA6 | 27.2 (22.7) | 32.2 (22.7) | 33.3 (22.7) | 37.2 (21.4) | 33.0 (21.4) | 38.2 (21.4) |
| N7 | 24.5 (19.0) | 29.4 (19.0) | 30.5 (19.0) | 33.1 (18.9) | 33.5 (18.9) | 37.2 (18.9) |
| N8 | 24.4 (19.1) | 30.6 (19.1) | 30.9 (19.1) | 34.2 (18.8) | 32.3 (18.8) | 58.7 (18.8) |
| N9 | 26.0 (19.9) | 31.0 (19.9) | 32.4 (19.9) | 36.1 (20.0) | 33.8 (20.0) | 39.2 (20.0) |
| TA7 | 24.0 (19.4) | 29.7 (19.4) | 31.3 (19.4) | 32.1 (19.1) | 32.5 (19.1) | 36.6 (19.1) |
| TA8 | 24.1 (18.5) | 30.2 (18.5) | 31.0 (18.5) | 32.8 (18.5) | 33.2 (18.5) | 37.2 (18.5) |
| TA9 | 23.2 (18.2) | 28.6 (18.2) | 30.0 (18.2) | 32.6 (17.9) | 31.8 (17.9) | 38.9 (17.9) |
N, benign endometrial tissue code; TA, tumour-adjacent endometrial tissue code.
This table presents the raw data required for the relative gene expression analysis shown in Table 2. The mean CT values of each gene investigated and the mean CT value of β-ACTIN (in brackets), is given for each patient. Gene expression analysis is performed by comparing β-ACTIN values with those of the gene of interest, relative to one ‘control’ patient known as the calibrator (consequently assigned a gene expression value of 1) in order to determine relative inter-patient differences (see Table 2).
Benign proliferative endometrium (N) vs. grade 2 endometrioid tumour-adjacent (TA) endometrial tissue: relative gene expression (min-max expression levels).
| Patient code | ||||||
|---|---|---|---|---|---|---|
| N 1 | 1 (c)* (0.69–1.46) | 1 (c) (0.71–1.41) | 1 (c) (0.71–1.42) | 1 (c) (0.71–1.41) | 1 (c) (0.64–1.57) | 1 (c) (0.50–2.02) |
| N 2 | 1.06 (0.92–1.23) | 1.54 (1.32–1.81) | 0.83 (0.72–0.96) | 1.95 (1.28–2.96) | 1.53 (0.95–2.46) | 3.41 (2.58–4.51) |
| N 3 | 2.29 (1.68–3.13) | 4.31 (3.11–5.97) | 2.24 (1.71–2.93) | 0.90 (0.52–1.58) | 1.08 (0.65–1.81) | 1.15 (0.62–2.16) |
| TA 1 | 1.07 (0.77–1.49) | 1.02 (0.78–1.33) | 0.55 (0.40–0.75) | 7.36 (4.75–11.41) | 1.47 (0.99–2.19) | 8.90 (6.53–12.13) |
| TA 2 | 1.43 (1.29–1.58) | 1.77 (1.54–2.02) | 0.73 (0.65–0.83) | 1.44 (1.01–2.05) | 2.82 (1.88–4.24) | 2.64 (1.61–4.33) |
| TA 3 | 1.12 (0.88–1.43) | 1.03 (0.82–1.29) | 0.74 (0.52–1.04) | 0.98 (0.79–1.22) | 1.77 (1.34–2.33) | 1.00 (0.59–1.69) |
| N 4 | 1 (c) (0.91–1.10) | 1 (c) (0.88–1.14) | 1 (c) (0.88–1.14) | 1 (c) (0.96–1.05) | 1 (c) (0.70–1.43) | 1 (c) (0.74–1.34) |
| N 5 | 0.61 (0.49–0.76) | 1.42 (1.08–1.87) | 0.85 (0.59–1.23) | 2.32 (2.10–2.57) | 1.82 (1.32–2.49) | 2.06 (0.43–9.80) |
| N 6 | 0.93 (0.72–1.20) | 0.87 (0.53–1.42) | 1.14 (0.85–1.54) | 0.05 (0.03–0.06) | 0.62 (0.31–1.27) | 2.56 (1.36–4.82) |
| TA 4 | 2.13 (1.91–2.38) | 1.77 (1.62–1.94) | 2.49 (2.19–2.82) | 0.02 (0.01–0.03) | 0.70 (0.38–1.31) | 16.19 (10.38–25.23) |
| TA 5 | 2.88 (2.56–3.25) | 2.13 (1.89–2.40) | 2.24 (1.88–2.65) | 0.01 (0.01–0.02) | 0.57 (0.43–0.76) | 2.92 (1.28–4.28) |
| TA 6 | 2.16 (1.88–2.48) | 1.73 (1.49–2.02) | 1.11 (0.86–1.44) | 0.03 (0.02–0.05) | 5.70 (4.08–7.96) | 9.76 (4.02–23.71) |
| N 7 | 1 (c) (0.53–1.88) | 1 (c) (0.54–1.87) | 1 (c) (0.45–2.22) | 1 (c) (0.62–1.61) | 1 (c) (0.49–2.06) | 1 (c) (0.39–2.59) |
| N 8 | 1.12 (0.64–1.97) | 0.49 (0.29–0.85) | 0.80 (0.39–1.67) | 0.41 (0.23–0.75) | 2.15 (1.36–3.41) | NQ |
| N 9 | 0.66 (0.48–0.91) | 0.63 (0.45–0.86) | 0.49 (0.29–0.83) | 0.26 (0.16–0.44) | 1.69 (0.84–3.42) | 0.51 (0.16–1.63) |
| TA 7 | 1.80 (1.34–2.40) | 1.15 (0.78–1.69) | 0.78 (0.59–1.03) | 2.37 (1.79–3.13) | 2.42 (1.88–3.12) | 1.77 (1.01–3.08) |
| TA 8 | 0.98 (0.68–1.40) | 0.42 (0.32–0.56) | 0.51 (0.37–0.71) | 0.87 (0.62–1.22) | 0.91 (0.55–1.51) | 0.76 (0.50–1.17) |
| TA 9 | 1.37 (0.99–1.89) | 1.05 (0.81–1.34) | 0.79 (0.62–1.00) | 0.68 (0.41–1.13) | 1.59 (0.76–3.32) | 0.15 (0.003–7.94) |
NQ, not quantified, detected but only at a very low level; c, calibrator control.
Patients who donated tissue for the research purpose of this study were chronologically numbered. For inter-individual variations, the mRNA transcript levels derived from the first patient number was arbitrarily taken as the calibrator control (*) and set to 1 (for raw data, see Supplementary Information, Table 1S). Quantitative gene expression was carried out exactly as previously described [20,21], with minimum–maximum expression in brackets. Within each experiment, reactions were performed in triplicate and ‘no-template’ controls were included. Averaged threshold cycle (CT) values for each reaction were normalized to β-ACTIN values thus giving ΔCT values. Alterations in gene expression were determined by comparison with the tissue value assigned as the calibrator, giving ΔΔCT values. Finally, relative gene expression was calculated using the formula 2−ΔΔCT.
Benign vs. tumour-adjacent prostate, mean CT values (corresponding β-ACTIN CT value).
| Code | ||||||
|---|---|---|---|---|---|---|
| PROS 1 | 36.4 (23.9) | 39.5 (23.9) | 43.9 (23.9) | 37.0 (24.4) | 37.2 (24.4) | 57.1 (24.4) |
| PROS 2 | 34.4 (24.9) | 36.6 (24.9) | 44.4 (24.9) | 34.8 (23.3) | 35.0 (23.3) | 53.2 (23.3) |
| PROS 3 | 33.8 (20.7) | 40.1 (20.7) | 41.6 (20.7) | 36.5 (20.3) | 33.1 (20.3) | 37.5 (20.3) |
| TA 13 | 29.1 (19.7) | 35.2 (19.7) | 36.0 (19.7) | 36.3 (19.5) | 32.8 (19.5) | 38.6 (19.5) |
| TA 14 | 28.8 (19.0) | 34.5 (19.0) | 34.2 (19.0) | 35.4 (18.3) | 31.0 (18.3) | 36.4 (18.3) |
| TA 15 | 30.0 (21.0) | 35.3 (21.0) | 37.1 (21.0) | 36.5 (21.2) | 33.5 (21.2) | 38.8 (21.2) |
| PROS 4 | 41.3 (29.8) | 43.0 (29.8) | 56.1 (29.8) | Insuff | Insuff | Insuff |
| PROS 5 | 39.0 (26.3) | 48.2 (26.3) | 53.2 (26.3) | Insuff | Insuff | Insuff |
| PROS 6 | 37.7 (29.7) | 39.3 (29.7) | 50.3 (29.7) | Insuff | Insuff | Insuff |
| TA 16 | 32.6 (29.4) | 34.6 (29.4) | 41.1 (29.4) | Insuff | Insuff | Insuff |
| TA 17 | 37.3 (26.1) | 40.0 (26.1) | 43.8 (26.1) | Insuff | Insuff | Insuff |
| TA 18 | 37.7 (26.6) | 40.1 (26.6) | 48.1 (26.6) | Insuff | Insuff | Insuff |
| PROS 7 | 36.2 (25.8) | 38.6 (25.8) | 44.7 (25.8) | 37.2 (25.7) | 34.6 (25.7) | 56.0 (25.7) |
| PROS 8 | 31.6 (25.3) | 32.9 (25.3) | 39.1 (25.3) | 31.2 (25.2) | 31.7 (25.2) | 42.1 (25.2) |
| PROS 9 | 33.4 (21.9) | 36.5 (21.9) | 41.3 (21.9) | 35.0 (21.2) | 34.2 (21.2) | 38.5 (21.2) |
| TA14 19 | 33.0 (25.3) | 35.5 (25.3) | 40.4 (25.3) | 36.0 (25.5) | 23.3 (25.5) | 48.2 (25.5) |
| TA17 20 | 31.0 (21.7) | 33.5 (21.7) | 37.2 (21.7) | 32.6 (21.5) | 30.8 (21.5) | 38.4 (21.5) |
| TA21 21 | 32.1 (22.4) | 34.9 (22.4) | 38.2 (22.4) | Insuff | Insuff | Insuff |
| TA8 22 | Insuff | Insuff | Insuff | 33.8 (20.1) | 30.4 (20.1) | 36.8 (20.1) |
PROS, benign prostate tissue code; TA, tumour-adjacent prostate tissue code; Insuff, insufficient material.
This table presents the raw data required for the relative gene expression analysis shown in Table 3. The mean CT values of each gene investigated and the mean CT value of β-ACTIN (in brackets), is given for each patient. Gene expression analysis is performed by comparing β-ACTIN values with those of the gene of interest, relative to one ‘control’ patient known as the calibrator (consequently assigned a gene expression value of 1) in order to determine relative inter–patient differences (see Table 3).
Benign prostate tissue (PROS) vs. tumour-adjacent (TA) prostate tissue relative gene expression (min-max expression levels).
| Patient code | ||||||
|---|---|---|---|---|---|---|
| PROS 1 | 1 (c)* (0.71–1.41) | 1 (c) (0.25–4.10) | 1 (c) (0.06–16.2) | 5.95 (5.65–6.27) | 0.51 (0.36–0.71) | ND |
| PROS 2 | 8.04 (5.59–11.56) | 15.6 (8.64–28.17) | 1.41 (0.95–2.10) | 57.95 (47.1–71.4) | 5.04 (3.62–7.03) | ND |
| PROS 3 | 0.70 (0.52–0.93) | 0.08 (0.02–0.29) | 0.56 (0.06–5.63) | 1 (c) (0.58–1.72) | 1 (c) (0.87–1.15) | 1 (c) (0.78–1.29) |
| TA 13 | 8.13 (3.15–21.0) | 1.07 (0.60–1.91) | 12.38 (2.75–55.78) | 0.65 (0.54–0.78) | 0.74 (0.29–1.9) | 0.28 (0.23–0.33) |
| TA 14 | 6.59 (3.37–12.88) | 1.13 (0.60–2.13) | 28.44 (13.79–58.66) | 0.54 (0.12–2.49) | 1.18 (0.22–6.52) | 0.59 (0.11–3.08) |
| TA 15 | 10.9 (7.15–16.6) | 2.57 (1.61–4.10) | 15.4 (8.40–27.27) | 1.81 (0.86–3.82) | 1.44 (0.77–2.69) | 0.78 (0.23–2.61) |
| PROS 4 | 1 (c) (0.24–4.25) | 1 (c) (0.31–3.22) | 1 (c) (0.11–9.14) | Insuff | Insuff | Insuff |
| PROS 5 | 0.44 (0.08–2.43) | 0.002 (0.001–0.007) | 0.63 (0.06–6.76) | Insuff | Insuff | Insuff |
| PROS 6 | 11.39 (3.58–36.29) | 11.69 (3.72–36.73) | 51.4 (6.78–389.6) | Insuff | Insuff | Insuff |
| TA 16 | 300.3 (202.4–445.4) | 250.2 (180.3–347.1) | 24,154.4 (10,085.4–57,849.9) | Insuff | Insuff | Insuff |
| TA 17 | 1.26 (0.86–1.86) | 0.61 (0.3–1.27) | 385.79 (88.89–1,674.4) | Insuff | Insuff | Insuff |
| TA 18 | 1.35 (0.46–3.96) | 0.81 (0.3–2.21) | 28.4 (11.9–68) | Insuff | Insuff | Insuff |
| PROS 7 | 1 (c) (0.65–1.54) | 1 (c) (0.56–1.8) | 1 (c) (0.17–5.91) | 4.94 (3.49–6.98) | 18.24 (15.1–22.12) | ND |
| PROS 8 | 17.39 (13.87–21.8) | 37.01 (30.5–44.93) | 35.34 (24.23–51.56) | 227.5 (207.9–249.0) | 95.56 (69.65–131.1) | 1.35 (0.31–5.93) |
| PROS 9 | 0.48 (0.26–0.89) | 0.29 (0.12–0.68) | 0.7 (0.05–9.21) | 1 (c) (0.79–1.27) | 1 (c) (0.54–1.86) | 1 (c) (0.64–1.55) |
| TA 19 | 6.76 (2.83–16.14) | 6.53 (2.79–15.3) | 15.31 (2.02–116.23) | 10.13 (7.19–14.26) | 77.62 (28.89–208.6) | 0.02 (0.003–0.21) |
| TA 20 | 2.1 (1.83–2.42) | 2.07 (1.5–2.86) | 10.85 (5.53–21.29) | 6.04 (3.58–10.18) | 13.01 (6.59–25.68) | 1.28 (0.31–5.23) |
| TA 21 | 1.67 (1.5–1.86) | 1.29 (0.81–2.06) | 9.47 (5.43–16.53) | Insuff | Insuff | Insuff |
| TA 22 | Insuff | Insuff | Insuff | 1.07 (0.81–1.41) | 6.58 (5.18–8.36) | 1.41 (0.68–2.93) |
ND, not detected; c, calibrator control; Insuff, insufficient material.
Patients who donated tissue for the research purpose of this study were chronologically numbered. For inter–individual variations, the mRNA transcript levels derived from the first patient number was arbitrarily taken as the calibrator control (*) and set to 1 (for raw data, see Supplementary Information, Table 2S). Quantitative gene expression was carried out exactly as previously described [20,21], with minimum–maximum expression in brackets. Within each experiment, reactions were performed in triplicate and ‘no-template’ controls were included. Averaged threshold cycle (CT) values for each reaction were normalized to β-ACTIN values thus giving ΔCT values. Alterations in gene expression were determined by comparison with the tissue value assigned as the calibrator, giving ΔΔCT values. Finally, relative gene expression was calculated using the formula 2−ΔΔCT.
Figure 1Graphical representation of relative ERαΔ5 expression (bars) with min-max levels (lines) in normal (PROS) vs. tumour-adjacent (TA) prostate tissue. The y-axis is split-scale to allow all data to be plotted together.
Prostate samples demographic details.
| Code | Age (y) | PSA (ng/mL) | Gleason grade |
|---|---|---|---|
| PROS 1 | 71 | 3.75 | NA |
| PROS 2 | 81 | 4.99 | NA |
| PROS 3 | 72 | NK | NA |
| PROS 4 | 72 | 4.96 | NA |
| PROS 5 | 73 | 2.49 | NA |
| PROS 6 | 74 | 6.25 | NA |
| PROS 7 | 81 | 5 | NA |
| PROS 8 | 62 | 5.7 | NA |
| PROS 9 (open) | 82 | 34 | NA |
| PROS 10 | 79 | 3.75 | NA |
| PROS 11 | 71 | 4.19 | NA |
| PROS 12 (open) | 73 | 5 | NA |
| TA 13 | 60 | 11.5 | 3 + 3 |
| TA 14 | 61 | 8.2 | 3 + 3 |
| TA 15 | 64 | 8.7 | 4 + 4 |
| TA 16 | 65 | 6.5 | 3 + 3 |
| TA 17 | 56 | 2.7 | benign |
| TA 18 | 67 | NK | benign |
| TA 19 | NK | NK | NK |
| TA 20 | 66 | 9 | 3 + 3 |
| TA 21 | 57 | 5.3 | 3 + 3 |
| TA 22 | 63 | 5.8 | 3 + 4 |
| IND 1 | 58 | 1.2 | NA |
| IND 2 | 60 | 2.4 | NA |
| IND 3 | 63 | 0.3 | NA |
| IND 4 | 76 | 3.2 | NA |
| IND 5 | 75 | 0.3 | NA |
| IND 6 | 65 | 0.2 | NA |
| IND 7 | 79 | 2.5 | NA |
| IND 8 | 74 | 0.3 | NA |
| IND 9 | 65 | 0.6 | NA |
| IND 10 | NK | NK | NA |
| IND 11 | 62 | 3.3 | NA |
| IND 12 | 47 | 2.4 | NA |
| IND 13 | 64 | 2.4 | NA |
| IND 14 | 60 | 0.3 | NA |
| IND 15 | 74 | 1.4 | NA |
NK, not known; NA, not applicable; open, open prostatectomy.
PROS, Benign UK-resident prostate tissue code; TA, tumour-adjacent prostate tissue code; IND, Benign India-resident prostate tissue code.
Endometrial samples demographic details.
| Code | Age (y) | Histology | Stage | |||
|---|---|---|---|---|---|---|
| N1 | 39 | proliferative | NA | |||
| N2 | 46 | early proliferative | NA | |||
| N3 | 42 | proliferative | NA | |||
| N4 | 39 | proliferative | NA | |||
| N5 | 46 | proliferative | NA | |||
| N6 | 51 | proliferative | NA | |||
| N7 | 42 | proliferative | NA | |||
| N8 | 43 | proliferative to early secretory with simple hyperplasia | NA | |||
| N9 | 43 | proliferative | NA | |||
| TA1 | 58 | G2 endometrioid | 3a | |||
| TA2 | 74 | G2 endometrioid | 1c | |||
| TA3 | 67 | G2 endometrioid | 1b | |||
| TA4 | 84 | G2 endometrioid | 1a | |||
| TA5 | 57 | G2 endometrioid | 1a | |||
| TA6 | 77 | G2 endometrioid | 1c | |||
| TA7 | 70 | G2 endometrioid | 1b | |||
| TA8 | 62 | G2 endometrioid | 1b | |||
| TA9 | 62 | G2 endometrioid | 2a | |||
N, benign endometrial tissue code;
TA, tumour-adjacent endometrial tissue code;
NA, not applicable.
UK vs. India prostate, mean CT values (corresponding β-ACTIN CT value).
| Code | ||||||
|---|---|---|---|---|---|---|
| PROS 10 | 39.2 (26.9) | 40.2 (26.9) | 41.5 (26.9) | 39.8 (25.7) | 35.8 (25.7) | 45.8 (25.7) |
| PROS 11 | 36.1 (24.7) | 39.1 (24.7) | 41.1 (24.7) | 38.4 (23.4) | 35.1 (23.4) | 40.6 (23.4) |
| PROS 12 | 33.9 (22.2) | 37.0 (22.2) | 38.2 (22.2) | 37.5 (21.1) | 33.2 (21.1) | 41.0 (21.1) |
| IND11 | Insuff | Insuff | Insuff | 37.8 (22.9) | 34.3 (22.9) | 45.2 (22.9) |
| IND12 | 34.2 (21.8) | 38.8 (21.8) | 38.3 (21.8) | 40.4 (21.6) | 35.6 (21.6) | 47.7 (21.6) |
| IND13 | Insuff | Insuff | Insuff | 33.8 (25.7) | 35.8 (25.7) | 43.3 (25.7) |
| IND14 | 34.6 (22.0) | 37.9 (22.0) | 41.6 (22.0) | Insuff | Insuff | Insuff |
| IND15 | 36.8 (27.0) | 38.2 (27.0) | 40.9 (27.0) | Insuff | Insuff | Insuff |
| PROS 7 | 35.7 (26.2) | 37.3 (26.2) | 45.4 (26.2) | 36.2 (26.1) | 48.7 (26.1) | 51.4 (26.1) |
| PROS 8 | 30.2 (25.9) | 32.8 (25.9) | 38.0 (25.9) | 30.8 (25.6) | 41.9 (25.6) | 41.6 (25.6) |
| PROS 9 | 32.9 (22.3) | 35.9 (22.3) | 39.0 (22.3) | 34.0 (22.6) | 50.0 (22.6) | 36.7 (22.6) |
| IND1 | 33.7 (23.1) | 39.1 (23.1) | 42.0 (23.1) | 39.6 (21.8) | 53.9 (21.8) | 55.1 (21.8) |
| IND2 | 35.7 (28.6) | 38.1 (28.6) | 42.4 (28.6) | 35.4 (26.9) | 48.1 (26.9) | 50.6 (26.9) |
| IND3 | 33.7 (24.9) | 35.9 (24.9) | ND | 33.0 (23.4) | 48.5 (23.4) | 50.5 (23.4) |
| PROS 1 | Insuff | Insuff | Insuff | 36.6 (23.8) | 37.8 (23.8) | 41.3 (23.8) |
| PROS 2 | Insuff | Insuff | Insuff | 34.4 (24.6) | 34.1 (24.6) | 43.2 (24.6) |
| PROS 3 | Insuff | Insuff | Insuff | 36.5 (20.5) | 33.6 (20.5) | 40.6 (20.5) |
| IND4 | Insuff | Insuff | Insuff | 40.3 (23.4) | 37.1 (23.4) | 46.2 (23.4) |
| IND5 | Insuff | Insuff | Insuff | ND | 46.0 (30.0) | 44.4 (30.0) |
| IND6 | Insuff | Insuff | Insuff | 32.1 (23.6) | 34.4 (23.6) | 38.9 (23.6) |
| PROS 4 | Insuff | Insuff | Insuff | 38.1 (27.3) | 37.3 (27.3) | 44.4 (27.3) |
| PROS 5 | Insuff | Insuff | Insuff | 38.7 (23.2) | 36.2 (23.2) | 45.9 (23.2) |
| PROS 6 | Insuff | Insuff | Insuff | 35.3 (27.8) | 36.4 (27.8) | 39.8 (27.8) |
| IND7 | Insuff | Insuff | Insuff | 32.4 (25.3) | 35.4 (25.3) | 39.8 (25.3) |
| IND8 | Insuff | Insuff | Insuff | 37.2 (21.0) | 33.4 (21.0) | 37.0 (21.0) |
| IND10 | Insuff | Insuff | Insuff | 38.8 (23.4) | 35.0 (23.4) | 47.6 (23.4) |
ND, not detected; Insuff, insufficient material.
PROS, Benign UK-resident prostate tissue code; IND, Benign India-resident prostate tissue code
This table presents the raw data required for the relative gene expression analysis shown in Table 4. The mean CT values of each gene investigated and the mean CT value of β-ACTIN (in brackets), is given for each patient. Gene expression analysis is performed by comparing β-ACTIN values with those of the gene of interest, relative to one ‘control’ patient known as the calibrator (consequently assigned a gene expression value of 1) in order to determine relative inter–patient differences (see Table 4).
Benign UK prostate tissue (PROS) vs. benign Indian prostate tissue (IND) (min–max expression levels).
| Patient code | ||||||
|---|---|---|---|---|---|---|
| PROS 10 | 1 (c)* (0.2–4.93) | 1 (c) (0.15–6.88) | 1 (c) (0.57–1.74) | 1 (c) (0.74–1.36) | 1 (c) (0.48–2.09) | 1 (c) (0.47–2.13) |
| PROS 11 | 1.86 (1.31–2.64) | 0.45 (0.22–0.95) | 0.3 (0.15–0.59) | 0.54 (0.39–0.74) | 0.33 (0.2–0.55) | 8.16 (2.0–33.22) |
| PROS 12 | 1.40 (0.87–2.24) | 0.34 (0.26–0.44) | 0.35 (0.26–0.48) | 0.21 (0.1–0.42) | 0.26 (0.13–0.55) | 1.22 (0.17–8.8) |
| IND 11 | Insuff | Insuff | Insuff | 0.58 (0.21–1.65) | 0.42 (0.22–0.8) | 0.23 (0.01–6.1) |
| IND 12 | 0.82 (0.58–1.18) | 0.07 (0.02–0.3) | 0.26 (0.2–0.34) | 0.04 (0.02–0.06) | 0.07 (0.05–0.1) | 0.02 (0.01–0.03) |
| IND 13 | Insuff | Insuff | Insuff | 65.12 (11.2–375.4) | 0.99 (0.16–6.24) | 6.12 (0.98–38.19) |
| IND 14 | 0.79 (0.61–1.04) | 0.16 (0.1–0.26) | 0.03 (0.02–0.05) | Insuff | Insuff | Insuff |
| IND 15 | 5.54 (3.53–8.69) | 4.23 (2.91–6.16) | 1.58 (0.19–12.85) | Insuff | Insuff | Insuff |
| PROS 7 | 1 (c) (0.63–1.59) | 1 (c) (0.78–1.28) | 1 (c) (0.60–1.67) | 1 (c) (0.53–1.88) | 1 (c) (0.35–2.83) | 1 (c) (0.45–2.23) |
| PROS 8 | 36.59 (31.22–42.88) | 19.12 (16.01–22.82) | 142.7 (86.53–235.3) | 29.24 (19.35–44.2) | 78.43 (21.56–285.3) | 654.8 (61.56–6,966.2) |
| PROS 9 | 0.48 (0.31–0.74) | 0.18 (0.13–0.25) | 5.74 (1.11–29.65) | 0.41 (0.25–0.67) | 0.04 (0.02–0.09) | 2,341.7(1,122.7–4,884.3) |
| IND 1 | 0.44 (0.31–0.62) | 0.03 (0.01–0.09) | 1.19 (0.14–10.4) | 0.005 (0.004–0.007) | 0.001 (0–0.011) | 0.004 (0.003–0.005) |
| IND 2 | 5.27 (2.79–9.95) | 3.09 (1.81–5.26) | ND | 3.0 (2.16–4.16) | 2.69 (0.47–15.37) | 3.07 (0.57–16.45) |
| IND 3 | 1.53 (1.22–1.92) | 1.11 (0.62–1.99) | 3.23 (1.61–6.5) | 1.33 (0.81–2.16) | 0.18 (0.004–8.7) | 0.29 (0.01–6.63) |
| PROS 1 | Insuff | Insuff | Insuff | 1 (c) (0.6–1.67) | 1 (c) (0.1–10.14) | 1 (c) (0.19–5.37) |
| PROS 2 | Insuff | Insuff | Insuff | 8.46 (7.15–10.01) | 23.5 (21.1–26.17) | 0.45 (0.1–2.04) |
| PROS 3 | Insuff | Insuff | Insuff | 0.12 (0.08–0.17) | 1.96 (1.4–2.75) | 0.16 (0.02–1.71) |
| IND 4 | Insuff | Insuff | Insuff | 0.23 (0.1–0.54) | 4.79 (3.62–6.34) | 0.09 (0.06–0.13) |
| IND 5 | Insuff | Insuff | Insuff | ND | 0.25 (0.03–2.24) | 8.61 (2.59–28.69) |
| IND 6 | Insuff | Insuff | Insuff | 20.02 (15.34–26.12) | 9.47 (5.66–15.85) | 4.37 (2.59–7.35) |
| PROS 4 | Insuff | Insuff | Insuff | 1 (c) (0.67–1.49) | 1 (c) (0.43–2.33) | 1 (c) (0.19–5.32) |
| PROS 5 | Insuff | Insuff | Insuff | 0.04 (0.02–0.08) | 0.13 (0.09–0.17) | 0.02 (0.02–0.02) |
| PROS 6 | Insuff | Insuff | Insuff | 10.15 (4.1–25.11) | 2.87 (1.31–6.26) | 35.7 (15.2–83.8) |
| IND 7 | Insuff | Insuff | Insuff | 13.64 (10.48–17.77) | 0.99 (0.66–1.49) | 6.26 (1.06–37.0) |
| IND 8 | Insuff | Insuff | Insuff | 0.02 (0.02–0.03) | 0.2 (0.14–0.29) | 2.26 (1.31–3.89) |
| IND 10 | Insuff | Insuff | Insuff | 0.04 (0.01–0.13) | 0.33 (0.19–0.56) | 0.01 (0.002–0.03) |
ND, not detected; c, calibrator control; Insuff, insufficient material.
Patients who donated tissue for the research purpose of this study were chronologically numbered. For inter–individual variations, the mRNA transcript levels derived from the first patient number was arbitrarily taken as the calibrator (*) and set to 1 (for raw data, see Supplementary Information, Table 3S). Quantitative gene expression was carried out exactly as previously described [20,21], with minimum–maximum expression in brackets. Within each experiment, reactions were performed in triplicate and ‘no–template’ controls were included. Averaged threshold cycle (CT) values for each reaction were normalized to β-ACTIN values thus giving ΔCT values. Alterations in gene expression were determined by comparison with the tissue value assigned as the calibrator, giving ΔΔCT values. Finally, relative gene expression was calculated using the formula 2−ΔΔCT.
Figure 2Representative photomicrographs in human prostate of staining by immunofluorescence over the range 500–540 nm for fluorescein (green antibody label identifying the spatial location of the protein) and 624–707 nm for PI (red-stained nuclei). (A) ERβ in benign prostate tissue (PROS 12); (B) ERβ in benign prostate tissue (PROS 12); (C) ERβ2 in benign prostate tissue (PROS 12); (D) ERβ2 in benign prostate tissue (PROS 12); (E) ERβ2 in benign prostate tissue (IND 8); and, (F) ERβ2 in benign prostate tissue (IND 8).