Literature DB >> 21139198

A new crystal form of human vascular adhesion protein 1.

Karin Ernberg1, Aaron P McGrath, Thomas S Peat, Timothy E Adams, Xiaowen Xiao, Tam Pham, Janet Newman, Ian A McDonald, Charles A Collyer, J Mitchell Guss.   

Abstract

Human vascular adhesion protein 1 (VAP-1) is involved in lymphocyte-endothelial cell adhesion and has been implicated in many human inflammatory diseases. VAP-1 is a member of the copper amine oxidase family of enzymes with a trihydroxyphenylalanine quinone (TPQ) cofactor. Previously characterized crystals of VAP-1 suffered from anisotropy and contained disordered regions; in addition, one form was consistently twinned. In an effort to grow crystals that diffracted to higher resolution for inhibitor-binding studies, a construct with an N-terminal deletion was made and expressed in the Chinese hamster ovary (CHO) glycosylation mutant cell line Lec8. Screening produced crystals that displayed some anisotropy and contained seven molecules per asymmetric unit. These crystals belonged to space group C2, with unit-cell parameters a=394.5, b=115.8, c=179.3 Å, β=112.3°. The structure was refined to a resolution of 2.9 Å, with Rcryst and Rfree values of 0.250 and 0.286, respectively.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 21139198      PMCID: PMC2998357          DOI: 10.1107/S1744309110041515

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  29 in total

1.  Crystal structure of amine oxidase from bovine serum.

Authors:  Michele Lunelli; Maria Luisa Di Paolo; Marianna Biadene; Vito Calderone; Roberto Battistutta; Marina Scarpa; Adelio Rigo; Giuseppe Zanotti
Journal:  J Mol Biol       Date:  2005-01-25       Impact factor: 5.469

Review 2.  Targeting vascular adhesion protein-1 to treat autoimmune and inflammatory diseases.

Authors:  David J Smith; Petri J Vainio
Journal:  Ann N Y Acad Sci       Date:  2007-09       Impact factor: 5.691

Review 3.  Copper amine oxidase: cunning cofactor and controversial copper.

Authors:  H C Dawkes; S E Phillips
Journal:  Curr Opin Struct Biol       Date:  2001-12       Impact factor: 6.809

4.  Copper amine oxidase from Hansenula polymorpha: the crystal structure determined at 2.4 A resolution reveals the active conformation.

Authors:  R Li; J P Klinman; F S Mathews
Journal:  Structure       Date:  1998-03-15       Impact factor: 5.006

5.  Carbohydrates located on the top of the "cap" contribute to the adhesive and enzymatic functions of vascular adhesion protein-1.

Authors:  Sanna-Mari Maula; Tiina Salminen; Sam Kaitaniemi; Yvonne Nymalm; David J Smith; Sirpa Jalkanen
Journal:  Eur J Immunol       Date:  2005-09       Impact factor: 5.532

6.  Crystal structure of the human vascular adhesion protein-1: unique structural features with functional implications.

Authors:  Tomi T Airenne; Yvonne Nymalm; Heidi Kidron; David J Smith; Marjo Pihlavisto; Marko Salmi; Sirpa Jalkanen; Mark S Johnson; Tiina A Salminen
Journal:  Protein Sci       Date:  2005-08       Impact factor: 6.725

7.  Absence of the endothelial oxidase AOC3 leads to abnormal leukocyte traffic in vivo.

Authors:  Craig M Stolen; Fumiko Marttila-Ichihara; Kaisa Koskinen; Gennady G Yegutkin; Raisa Turja; Petri Bono; Mikael Skurnik; Arno Hänninen; Sirpa Jalkanen; Marko Salmi
Journal:  Immunity       Date:  2005-01       Impact factor: 31.745

8.  The unique substrate specificity of human AOC2, a semicarbazide-sensitive amine oxidase.

Authors:  Sam Kaitaniemi; Heli Elovaara; Kirsi Grön; Heidi Kidron; Janne Liukkonen; Tiina Salminen; Marko Salmi; Sirpa Jalkanen; Kati Elima
Journal:  Cell Mol Life Sci       Date:  2009-07-09       Impact factor: 9.261

9.  Active site rearrangement of the 2-hydrazinopyridine adduct in Escherichia coli amine oxidase to an azo copper(II) chelate form: a key role for tyrosine 369 in controlling the mobility of the TPQ-2HP adduct.

Authors:  Minae Mure; Christian R Kurtis; Doreen E Brown; Melanie S Rogers; Winston S Tambyrajah; Colin Saysell; Carrie M Wilmot; Simon E V Phillips; Peter F Knowles; David M Dooley; Michael J McPherson
Journal:  Biochemistry       Date:  2005-02-08       Impact factor: 3.162

10.  Cloning of vascular adhesion protein 1 reveals a novel multifunctional adhesion molecule.

Authors:  D J Smith; M Salmi; P Bono; J Hellman; T Leu; S Jalkanen
Journal:  J Exp Med       Date:  1998-07-06       Impact factor: 14.307

View more
  12 in total

Review 1.  Human copper-dependent amine oxidases.

Authors:  Joel Finney; Hee-Jung Moon; Trey Ronnebaum; Mason Lantz; Minae Mure
Journal:  Arch Biochem Biophys       Date:  2014-01-06       Impact factor: 4.013

Review 2.  Copper active sites in biology.

Authors:  Edward I Solomon; David E Heppner; Esther M Johnston; Jake W Ginsbach; Jordi Cirera; Munzarin Qayyum; Matthew T Kieber-Emmons; Christian H Kjaergaard; Ryan G Hadt; Li Tian
Journal:  Chem Rev       Date:  2014-03-03       Impact factor: 60.622

3.  Novel pyridazinone inhibitors for vascular adhesion protein-1 (VAP-1): old target-new inhibition mode.

Authors:  Eva Bligt-Lindén; Marjo Pihlavisto; István Szatmári; Zbyszek Otwinowski; David J Smith; László Lázár; Ferenc Fülöp; Tiina A Salminen
Journal:  J Med Chem       Date:  2013-12-13       Impact factor: 7.446

4.  Reaction of vascular adhesion protein-1 (VAP-1) with primary amines: mechanistic insights from isotope effects and quantitative structure-activity relationships.

Authors:  Dominic P H M Heuts; Jennet O Gummadova; Jiayun Pang; Stephen E J Rigby; Nigel S Scrutton
Journal:  J Biol Chem       Date:  2011-07-07       Impact factor: 5.157

5.  Implication for functions of the ectopic adipocyte copper amine oxidase (AOC3) from purified enzyme and cell-based kinetic studies.

Authors:  Sam H Shen; Diana L Wertz; Judith P Klinman
Journal:  PLoS One       Date:  2012-01-04       Impact factor: 3.240

6.  Copper amine oxidases catalyze the oxidative deamination and hydrolysis of cyclic imines.

Authors:  Toshiki Nagakubo; Takuto Kumano; Takehiro Ohta; Yoshiteru Hashimoto; Michihiko Kobayashi
Journal:  Nat Commun       Date:  2019-01-24       Impact factor: 14.919

7.  Functional modulation of vascular adhesion protein-1 by a novel splice variant.

Authors:  Sam Kaitaniemi; Kirsi Grön; Heli Elovaara; Marko Salmi; Sirpa Jalkanen; Kati Elima
Journal:  PLoS One       Date:  2013-01-18       Impact factor: 3.240

8.  Vascular adhesion protein 1 in the eye.

Authors:  Wenting Luo; Fang Xie; Zhongyu Zhang; Dawei Sun
Journal:  J Ophthalmol       Date:  2013-06-04       Impact factor: 1.909

9.  Mapping the interaction site and effect of the Siglec-9 inflammatory biomarker on human primary amine oxidase.

Authors:  Leonor Lopes de Carvalho; Heli Elovaara; Jerôme de Ruyck; Gerard Vergoten; Sirpa Jalkanen; Gabriela Guédez; Tiina A Salminen
Journal:  Sci Rep       Date:  2018-02-01       Impact factor: 4.379

Review 10.  Human Copper-Containing Amine Oxidases in Drug Design and Development.

Authors:  Serhii Vakal; Sirpa Jalkanen; Käthe M Dahlström; Tiina A Salminen
Journal:  Molecules       Date:  2020-03-12       Impact factor: 4.411

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.