Literature DB >> 21136082

Genome-wide screen for inositol auxotrophy in Saccharomyces cerevisiae implicates lipid metabolism in stress response signaling.

Manuel J Villa-García1, Myung Sun Choi, Flora I Hinz, María L Gaspar, Stephen A Jesch, Susan A Henry.   

Abstract

pan class="Chemical">Inositol auxotrophyn> (Ino(-) phenotype) in budding pan class="Species">yeast has classically been associated with misregulation of pan class="Gene">INO1 and other genes involved in lipid metabolism. To identify all non-essential yeast genes that are necessary for growth in the absence of inositol, we carried out a genome-wide phenotypic screening for deletion mutants exhibiting Ino(-) phenotypes under one or more growth conditions. We report the identification of 419 genes, including 385 genes not previously reported, which exhibit this phenotype when deleted. The identified genes are involved in a wide range of cellular processes, but are particularly enriched in those affecting transcription, protein modification, membrane trafficking, diverse stress responses, and lipid metabolism. Among the Ino(-) mutants involved in stress response, many exhibited phenotypes that are strengthened at elevated temperature and/or when choline is present in the medium. The role of inositol in regulation of lipid metabolism and stress response signaling is discussed.

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Year:  2010        PMID: 21136082      PMCID: PMC3037835          DOI: 10.1007/s00438-010-0592-x

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  151 in total

1.  The yeast inositol-sensitive upstream activating sequence, UASINO, responds to nitrogen availability.

Authors:  P Griac; S A Henry
Journal:  Nucleic Acids Res       Date:  1999-05-01       Impact factor: 16.971

2.  Stt4 PI 4-kinase localizes to the plasma membrane and functions in the Pkc1-mediated MAP kinase cascade.

Authors:  Anjon Audhya; Scott D Emr
Journal:  Dev Cell       Date:  2002-05       Impact factor: 12.270

3.  Role of the yeast phosphatidylinositol/phosphatidylcholine transfer protein (Sec14p) in phosphatidylcholine turnover and INO1 regulation.

Authors:  J L Patton-Vogt; P Griac; A Sreenivas; V Bruno; S Dowd; M J Swede; S A Henry
Journal:  J Biol Chem       Date:  1997-08-15       Impact factor: 5.157

4.  tRNA ligase is required for regulated mRNA splicing in the unfolded protein response.

Authors:  C Sidrauski; J S Cox; P Walter
Journal:  Cell       Date:  1996-11-01       Impact factor: 41.582

5.  ADA1, a novel component of the ADA/GCN5 complex, has broader effects than GCN5, ADA2, or ADA3.

Authors:  J Horiuchi; N Silverman; B Piña; G A Marcus; L Guarente
Journal:  Mol Cell Biol       Date:  1997-06       Impact factor: 4.272

6.  Wsc1 and Mid2 are cell surface sensors for cell wall integrity signaling that act through Rom2, a guanine nucleotide exchange factor for Rho1.

Authors:  B Philip; D E Levin
Journal:  Mol Cell Biol       Date:  2001-01       Impact factor: 4.272

7.  Interaction of trans and cis regulatory elements in the INO1 promoter of Saccharomyces cerevisiae.

Authors:  J M Lopes; S A Henry
Journal:  Nucleic Acids Res       Date:  1991-07-25       Impact factor: 16.971

8.  A block in endoplasmic reticulum-to-Golgi trafficking inhibits phospholipid synthesis and induces neutral lipid accumulation.

Authors:  Maria L Gaspar; Stephen A Jesch; Raghuvir Viswanatha; Amy L Antosh; William J Brown; Sepp D Kohlwein; Susan A Henry
Journal:  J Biol Chem       Date:  2008-07-09       Impact factor: 5.157

Review 9.  Phosphoinositides as regulators in membrane traffic.

Authors:  P De Camilli; S D Emr; P S McPherson; P Novick
Journal:  Science       Date:  1996-03-15       Impact factor: 47.728

10.  RSC1 and RSC2 are required for expression of mid-late sporulation-specific genes in Saccharomyces cerevisiae.

Authors:  David Bungard; Michelle Reed; Edward Winter
Journal:  Eukaryot Cell       Date:  2004-08
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  35 in total

1.  Activation of protein kinase C-mitogen-activated protein kinase signaling in response to inositol starvation triggers Sir2p-dependent telomeric silencing in yeast.

Authors:  Sojin Lee; Maria L Gaspar; Manuel A Aregullin; Stephen A Jesch; Susan A Henry
Journal:  J Biol Chem       Date:  2013-08-13       Impact factor: 5.157

Review 2.  Transparency in metabolic network reconstruction enables scalable biological discovery.

Authors:  Benjamin D Heavner; Nathan D Price
Journal:  Curr Opin Biotechnol       Date:  2015-01-03       Impact factor: 9.740

3.  Labeling of Phosphatidylinositol Lipid Products in Cells through Metabolic Engineering by Using a Clickable myo-Inositol Probe.

Authors:  Tanei J Ricks; Chelsi D Cassilly; Adam J Carr; Daiane S Alves; Shahrina Alam; Kathrin Tscherch; Timothy W Yokley; Cameron E Workman; Jennifer L Morrell-Falvey; Francisco N Barrera; Todd B Reynolds; Michael D Best
Journal:  Chembiochem       Date:  2018-10-17       Impact factor: 3.164

Review 4.  The response to inositol: regulation of glycerolipid metabolism and stress response signaling in yeast.

Authors:  Susan A Henry; Maria L Gaspar; Stephen A Jesch
Journal:  Chem Phys Lipids       Date:  2014-01-10       Impact factor: 3.329

5.  Saccharomyces cerevisiae Is Dependent on Vesicular Traffic between the Golgi Apparatus and the Vacuole When Inositolphosphorylceramide Synthase Aur1 Is Inactivated.

Authors:  Natalia S Voynova; Carole Roubaty; Hector M Vazquez; Shamroop K Mallela; Christer S Ejsing; Andreas Conzelmann
Journal:  Eukaryot Cell       Date:  2015-10-02

6.  Interaction between repressor Opi1p and ER membrane protein Scs2p facilitates transit of phosphatidic acid from the ER to mitochondria and is essential for INO1 gene expression in the presence of choline.

Authors:  Maria L Gaspar; Yu-Fang Chang; Stephen A Jesch; Manuel Aregullin; Susan A Henry
Journal:  J Biol Chem       Date:  2017-09-18       Impact factor: 5.157

7.  Phosphorylation regulates myo-inositol-3-phosphate synthase: a novel regulatory mechanism of inositol biosynthesis.

Authors:  Rania M Deranieh; Quan He; Joseph A Caruso; Miriam L Greenberg
Journal:  J Biol Chem       Date:  2013-07-30       Impact factor: 5.157

8.  Valproate Induces the Unfolded Protein Response by Increasing Ceramide Levels.

Authors:  Shyamalagauri Jadhav; Sarah Russo; Stéphanie Cottier; Roger Schneiter; Ashley Cowart; Miriam L Greenberg
Journal:  J Biol Chem       Date:  2016-09-01       Impact factor: 5.157

9.  Regulation of inositol metabolism is fine-tuned by inositol pyrophosphates in Saccharomyces cerevisiae.

Authors:  Cunqi Ye; W M M S Bandara; Miriam L Greenberg
Journal:  J Biol Chem       Date:  2013-07-02       Impact factor: 5.157

10.  Orm proteins integrate multiple signals to maintain sphingolipid homeostasis.

Authors:  Charulatha Gururaj; Ross S Federman; Ross Federman; Amy Chang
Journal:  J Biol Chem       Date:  2013-06-04       Impact factor: 5.157

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