Literature DB >> 21132209

Insights on the permeability of wide protein channels: measurement and interpretation of ion selectivity.

Vicente M Aguilella1, María Queralt-Martín, Marcel Aguilella-Arzo, Antonio Alcaraz.   

Abstract

Ion channels are hollow proteins that have evolved to exhibit discrimination between charged solutes. This property, known as ion selectivity is critical for several biological functions. By using the bacterial porin OmpF as a model system of wide protein channels, we demonstrate that significant insights can be gained when selectivity measurements are combined with electrodiffusion continuum models and simulations based on the atomic structure. A correct interpretation of the mechanisms ruling the many sources of channel discrimination is a first, indispensable step for the understanding of the controlled movement of ions into or out of cells characteristic of many physiological processes. We conclude that the scattered information gathered from several independent approaches should be appropriately merged to provide a unified and coherent picture of the channel selectivity.

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Year:  2010        PMID: 21132209     DOI: 10.1039/c0ib00048e

Source DB:  PubMed          Journal:  Integr Biol (Camb)        ISSN: 1757-9694            Impact factor:   2.192


  18 in total

1.  Ionic partition and transport in multi-ionic channels: a molecular dynamics simulation study of the OmpF bacterial porin.

Authors:  Jordi Faraudo; Carles Calero; Marcel Aguilella-Arzo
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

2.  Dynamics and Interactions of OmpF and LPS: Influence on Pore Accessibility and Ion Permeability.

Authors:  Dhilon S Patel; Suyong Re; Emilia L Wu; Yifei Qi; Phillip E Klebba; Göran Widmalm; Min Sun Yeom; Yuji Sugita; Wonpil Im
Journal:  Biophys J       Date:  2016-02-23       Impact factor: 4.033

3.  Colicin U from Shigella boydii Forms Voltage-Dependent Pores.

Authors:  Tereza Dolejšová; Albert Sokol; Juraj Bosák; David Šmajs; Ivo Konopásek; Gabriela Mikušová; Radovan Fišer
Journal:  J Bacteriol       Date:  2019-11-20       Impact factor: 3.490

Review 4.  VDAC inhibition by tubulin and its physiological implications.

Authors:  Tatiana K Rostovtseva; Sergey M Bezrukov
Journal:  Biochim Biophys Acta       Date:  2011-11-09

5.  Scaling Behavior of Ionic Transport in Membrane Nanochannels.

Authors:  María Queralt-Martín; M Lidón López; Marcel Aguilella-Arzo; Vicente M Aguilella; Antonio Alcaraz
Journal:  Nano Lett       Date:  2018-09-10       Impact factor: 11.189

6.  Tubulin-blocked state of VDAC studied by polymer and ATP partitioning.

Authors:  Philip A Gurnev; Tatiana K Rostovtseva; Sergey M Bezrukov
Journal:  FEBS Lett       Date:  2011-06-25       Impact factor: 4.124

7.  Layer-by-layer Assembled Membranes with Immobilized Porins.

Authors:  Sebastián Hernández; Cassandra Porter; Xinyi Zhang; Yinan Wei; Dibakar Bhattacharyya
Journal:  RSC Adv       Date:  2017-12-13       Impact factor: 3.361

8.  Hydrophobic pulmonary surfactant proteins SP-B and SP-C induce pore formation in planar lipid membranes: evidence for proteolipid pores.

Authors:  Elisa Parra; Antonio Alcaraz; Antonio Cruz; Vicente M Aguilella; Jesús Pérez-Gil
Journal:  Biophys J       Date:  2013-01-08       Impact factor: 4.033

9.  A structural study of ion permeation in OmpF porin from anomalous X-ray diffraction and molecular dynamics simulations.

Authors:  Balasundaresan Dhakshnamoorthy; Brigitte K Ziervogel; Lydia Blachowicz; Benoît Roux
Journal:  J Am Chem Soc       Date:  2013-11-06       Impact factor: 15.419

10.  Coronavirus E protein forms ion channels with functionally and structurally-involved membrane lipids.

Authors:  Carmina Verdiá-Báguena; Jose L Nieto-Torres; Antonio Alcaraz; Marta L DeDiego; Jaume Torres; Vicente M Aguilella; Luis Enjuanes
Journal:  Virology       Date:  2012-07-24       Impact factor: 3.616

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