Literature DB >> 21129881

Automated artifact detection and removal for improved tensor estimation in motion-corrupted DTI data sets using the combination of local binary patterns and 2D partial least squares.

Zhenyu Zhou1, Wei Liu, Jiali Cui, Xunheng Wang, Diana Arias, Ying Wen, Ravi Bansal, Xuejun Hao, Zhishun Wang, Bradley S Peterson, Dongrong Xu.   

Abstract

Signal variation in diffusion-weighted images (DWIs) is influenced both by thermal noise and by spatially and temporally varying artifacts, such as rigid-body motion and cardiac pulsation. Motion artifacts are particularly prevalent when scanning difficult patient populations, such as human infants. Although some motion during data acquisition can be corrected using image coregistration procedures, frequently individual DWIs are corrupted beyond repair by sudden, large amplitude motion either within or outside of the imaging plane. We propose a novel approach to identify and reject outlier images automatically using local binary patterns (LBP) and 2D partial least square (2D-PLS) to estimate diffusion tensors robustly. This method uses an enhanced LBP algorithm to extract texture features from a local texture feature of the image matrix from the DWI data. Because the images have been transformed to local texture matrices, we are able to extract discriminating information that identifies outliers in the data set by extending a traditional one-dimensional PLS algorithm to a two-dimension operator. The class-membership matrix in this 2D-PLS algorithm is adapted to process samples that are image matrix, and the membership matrix thus represents varying degrees of importance of local information within the images. We also derive the analytic form of the generalized inverse of the class-membership matrix. We show that this method can effectively extract local features from brain images obtained from a large sample of human infants to identify images that are outliers in their textural features, permitting their exclusion from further processing when estimating tensors using the DWIs. This technique is shown to be superior in performance when compared with visual inspection and other common methods to address motion-related artifacts in DWI data. This technique is applicable to correct motion artifact in other magnetic resonance imaging (MRI) techniques (e.g., the bootstrapping estimation) that use univariate or multivariate regression methods to fit MRI data to a pre-specified model.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 21129881     DOI: 10.1016/j.mri.2010.06.022

Source DB:  PubMed          Journal:  Magn Reson Imaging        ISSN: 0730-725X            Impact factor:   2.546


  16 in total

1.  Informed RESTORE: A method for robust estimation of diffusion tensor from low redundancy datasets in the presence of physiological noise artifacts.

Authors:  Lin-Ching Chang; Lindsay Walker; Carlo Pierpaoli
Journal:  Magn Reson Med       Date:  2012-01-27       Impact factor: 4.668

Review 2.  Diffusion MRI of the neonate brain: acquisition, processing and analysis techniques.

Authors:  Kerstin Pannek; Andrea Guzzetta; Paul B Colditz; Stephen E Rose
Journal:  Pediatr Radiol       Date:  2012-08-18

Review 3.  Acquisition guidelines and quality assessment tools for analyzing neonatal diffusion tensor MRI data.

Authors:  A M Heemskerk; A Leemans; A Plaisier; K Pieterman; M H Lequin; J Dudink
Journal:  AJNR Am J Neuroradiol       Date:  2013-03-21       Impact factor: 3.825

4.  Automated assessment of the quality of diffusion tensor imaging data using color cast of color-encoded fractional anisotropy images.

Authors:  Xiaofu He; Wei Liu; Xuzhou Li; Qingli Li; Feng Liu; Virginia A Rauh; Dazhi Yin; Ravi Bansal; Yunsuo Duan; Alayar Kangarlu; Bradley S Peterson; Dongrong Xu
Journal:  Magn Reson Imaging       Date:  2014-01-28       Impact factor: 2.546

Review 5.  The role of diffusion tensor imaging in detecting microstructural changes in prodromal Alzheimer's disease.

Authors:  Bing Zhang; Yun Xu; Bin Zhu; Kejal Kantarci
Journal:  CNS Neurosci Ther       Date:  2013-12-12       Impact factor: 5.243

6.  Phase Image Texture Analysis for Motion Detection in Diffusion MRI (PITA-MDD).

Authors:  Nahla M H Elsaid; Jerry L Prince; Steven Roys; Rao P Gullapalli; Jiachen Zhuo
Journal:  Magn Reson Imaging       Date:  2019-07-15       Impact factor: 2.546

Review 7.  What's new and what's next in diffusion MRI preprocessing.

Authors:  Chantal M W Tax; Matteo Bastiani; Jelle Veraart; Eleftherios Garyfallidis; M Okan Irfanoglu
Journal:  Neuroimage       Date:  2021-12-26       Impact factor: 7.400

8.  Motion artifact reduction in pediatric diffusion tensor imaging using fast prospective correction.

Authors:  A Alhamud; Paul A Taylor; Barbara Laughton; André J W van der Kouwe; Ernesta M Meintjes
Journal:  J Magn Reson Imaging       Date:  2014-06-17       Impact factor: 4.813

9.  A hitchhiker's guide to diffusion tensor imaging.

Authors:  José M Soares; Paulo Marques; Victor Alves; Nuno Sousa
Journal:  Front Neurosci       Date:  2013-03-12       Impact factor: 4.677

10.  A robust post-processing workflow for datasets with motion artifacts in diffusion kurtosis imaging.

Authors:  Xianjun Li; Jian Yang; Jie Gao; Xue Luo; Zhenyu Zhou; Yajie Hu; Ed X Wu; Mingxi Wan
Journal:  PLoS One       Date:  2014-04-11       Impact factor: 3.240

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