Literature DB >> 21126544

Site-directed mutagenesis of the glycine-rich loop of death associated protein kinase (DAPK) identifies it as a key structure for catalytic activity.

Laurie K McNamara1, Joseph S Brunzelle, James P Schavocky, D Martin Watterson, Valerie Grum-Tokars.   

Abstract

Death associated protein kinase (DAPK) is a calmodulin (CaM)-regulated protein kinase that is a therapeutic target for central nervous system (CNS) disorders. We report here the results of studies that test the hypothesis of McNamara et al. (2009) that conformational selection in DAPK's glycine-rich region is key for catalytic activity. The hypothesis was tested by site-directed mutagenesis of glutamine-23 (Q23) in the middle of this loop. The glycine-rich loop exhibits localized differences in structure among DAPK conformations that correlate with different stages of the catalytic cycle. Changing the Q23 to a Valine (V23), found at the corresponding position in another CaM regulated protein kinase, results in a reduced catalytic efficiency. High resolution X-ray crystal structures of various conformations of the Q23V mutant DAPK and their superimposition with the corresponding conformations from wild type catalytic domain reveal localized changes in the glycine-rich region. The effect of the mutation on DAPK catalytic activity and the finding of only localized changes in the DAPK structure provide experimental evidence implicating conformational selection in this domain with activity. This article is part of a Special Issue entitled: 11th European Symposium on Calcium. 2010 Elsevier B.V. All rights reserved.

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Year:  2010        PMID: 21126544      PMCID: PMC3101106          DOI: 10.1016/j.bbamcr.2010.11.011

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  17 in total

Review 1.  Kinetic and catalytic mechanisms of protein kinases.

Authors:  J A Adams
Journal:  Chem Rev       Date:  2001-08       Impact factor: 60.622

2.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

3.  wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models.

Authors:  A Perrakis; T K Sixma; K S Wilson; V S Lamzin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-07-01

4.  Crystal structures of the catalytic domain of human protein kinase associated with apoptosis and tumor suppression.

Authors:  V Tereshko; M Teplova; J Brunzelle; D M Watterson; M Egli
Journal:  Nat Struct Biol       Date:  2001-10

5.  A protein kinase associated with apoptosis and tumor suppression: structure, activity, and discovery of peptide substrates.

Authors:  A V Velentza; A M Schumacher; C Weiss; M Egli; D M Watterson
Journal:  J Biol Chem       Date:  2001-08-01       Impact factor: 5.157

6.  Serine-53 at the tip of the glycine-rich loop of cAMP-dependent protein kinase: role in catalysis, P-site specificity, and interaction with inhibitors.

Authors:  R T Aimes; W Hemmer; S S Taylor
Journal:  Biochemistry       Date:  2000-07-18       Impact factor: 3.162

Review 7.  Death-associated protein kinase as a potential therapeutic target.

Authors:  Andrew M Schumacher; Anastasia V Velentza; D Martin Watterson
Journal:  Expert Opin Ther Targets       Date:  2002-08       Impact factor: 6.902

8.  An aminopyridazine-based inhibitor of a pro-apoptotic protein kinase attenuates hypoxia-ischemia induced acute brain injury.

Authors:  Anastasia V Velentza; Mark S Wainwright; Magdalena Zasadzki; Salida Mirzoeva; Andrew M Schumacher; Jacques Haiech; Pamela J Focia; Martin Egli; D Martin Watterson
Journal:  Bioorg Med Chem Lett       Date:  2003-10-20       Impact factor: 2.823

9.  DAPK catalytic activity in the hippocampus increases during the recovery phase in an animal model of brain hypoxic-ischemic injury.

Authors:  Andrew M Schumacher; Anastasia V Velentza; D Martin Watterson; Mark S Wainwright
Journal:  Biochim Biophys Acta       Date:  2002-11-04

10.  Analysis by mutagenesis of the ATP binding site of the gamma subunit of skeletal muscle phosphorylase kinase expressed using a baculovirus system.

Authors:  J H Lee; S Maeda; K L Angelos; S G Kamita; C Ramachandran; D A Walsh
Journal:  Biochemistry       Date:  1992-11-03       Impact factor: 3.162

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