Literature DB >> 21118156

Target genes of the largest human SWI/SNF complex subunit control cell growth.

Hiroko Inoue1, Stavros Giannakopoulos, Christopher N Parkhurst, Tatsushi Matsumura, Evelyn A Kono, Takako Furukawa, Naoko Tanese.   

Abstract

The largest subunit of the mammalian SWI/SNF-A or BAF (BRG1-associated factor) chromatin-remodelling complex is encoded by two related cDNAs hOsa1/BAF250a and hOsa2/BAF250b that are unique to the BAF complex and absent in the related PBAF (Polybromo BAF). hOsa/BAF250 has been shown to interact with transcriptional activators and bind to DNA suggesting that it acts to target the remodelling complex to chromatin. To better understand the functions of hOsa2, we established inducible stable HeLa cell lines over-expressing FLAG-hOsa2 or a derivative lacking the ARID (AT-rich interactive domain) DNA-binding domain. Immunopurification of complexes containing hOsa2 that was followed by mass spectrometry and immunoblotting demonstrated the presence of BRG1 and known BAFs, but not hOsa1 or hBRM. Deletion of the ARID did not compromise the integrity of the complex. Induction of hOsa2 expression caused impaired cell growth and accumulation of cells in the G0/G1 cell cycle phase. Elevated levels of the p53 and p21 proteins were detected in these cells while c-Myc mRNA and protein levels were found to decrease. Chromatin immunoprecipitation and reporter assays suggested that hOsa2 had a direct effect on c-myc and p21 promoter activity. Thus hOsa2 plays an important role in controlling genes regulating the cell cycle.

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Year:  2011        PMID: 21118156      PMCID: PMC4090146          DOI: 10.1042/BJ20101358

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  56 in total

1.  Analysis of promoter binding by the E2F and pRB families in vivo: distinct E2F proteins mediate activation and repression.

Authors:  Y Takahashi; J B Rayman; B D Dynlacht
Journal:  Genes Dev       Date:  2000-04-01       Impact factor: 11.361

2.  Selectivity of chromatin-remodelling cofactors for ligand-activated transcription.

Authors:  B Lemon; C Inouye; D S King; R Tjian
Journal:  Nature       Date:  2001 Dec 20-27       Impact factor: 49.962

3.  A Brg1 null mutation in the mouse reveals functional differences among mammalian SWI/SNF complexes.

Authors:  S Bultman; T Gebuhr; D Yee; C La Mantia; J Nicholson; A Gilliam; F Randazzo; D Metzger; P Chambon; G Crabtree; T Magnuson
Journal:  Mol Cell       Date:  2000-12       Impact factor: 17.970

4.  Characterization of mammalian orthologues of the Drosophila osa gene: cDNA cloning, expression, chromosomal localization, and direct physical interaction with Brahma chromatin-remodeling complex.

Authors:  Z Kozmik; O Machon; J Králová; J Kreslová; J Paces; C Vlcek
Journal:  Genomics       Date:  2001-04-15       Impact factor: 5.736

5.  Characterization of SWI/SNF protein expression in human breast cancer cell lines and other malignancies.

Authors:  M F Decristofaro; B L Betz; C J Rorie; D N Reisman; W Wang; B E Weissman
Journal:  J Cell Physiol       Date:  2001-01       Impact factor: 6.384

6.  The human SWI/SNF-B chromatin-remodeling complex is related to yeast rsc and localizes at kinetochores of mitotic chromosomes.

Authors:  Y Xue; J C Canman; C S Lee; Z Nie; D Yang; G T Moreno; M K Young; E D Salmon; W Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-21       Impact factor: 11.205

7.  A specificity and targeting subunit of a human SWI/SNF family-related chromatin-remodeling complex.

Authors:  Z Nie; Y Xue; D Yang; S Zhou; B J Deroo; T K Archer; W Wang
Journal:  Mol Cell Biol       Date:  2000-12       Impact factor: 4.272

8.  Osa-containing Brahma chromatin remodeling complexes are required for the repression of wingless target genes.

Authors:  R T Collins; J E Treisman
Journal:  Genes Dev       Date:  2000-12-15       Impact factor: 11.361

9.  Osa associates with the Brahma chromatin remodeling complex and promotes the activation of some target genes.

Authors:  R T Collins; T Furukawa; N Tanese; J E Treisman
Journal:  EMBO J       Date:  1999-12-15       Impact factor: 11.598

10.  Mammalian SWI/SNF--a subunit BAF250/ARID1 is an E3 ubiquitin ligase that targets histone H2B.

Authors:  Xuan Shirley Li; Patrick Trojer; Tatsushi Matsumura; Jessica E Treisman; Naoko Tanese
Journal:  Mol Cell Biol       Date:  2010-01-19       Impact factor: 4.272

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  14 in total

Review 1.  SWI/SNF chromatin remodeling complex: a new cofactor in reprogramming.

Authors:  Ling He; Huan Liu; Liling Tang
Journal:  Stem Cell Rev Rep       Date:  2012-03       Impact factor: 5.739

2.  Exome sequencing identifies frequent mutation of ARID1A in molecular subtypes of gastric cancer.

Authors:  Kai Wang; Junsuo Kan; Siu Tsan Yuen; Stephanie T Shi; Kent Man Chu; Simon Law; Tsun Leung Chan; Zhengyan Kan; Annie S Y Chan; Wai Yin Tsui; Siu Po Lee; Siu Lun Ho; Anthony K W Chan; Grace H W Cheng; Peter C Roberts; Paul A Rejto; Neil W Gibson; David J Pocalyko; Mao Mao; Jiangchun Xu; Suet Yi Leung
Journal:  Nat Genet       Date:  2011-10-30       Impact factor: 38.330

3.  ARID1A, a factor that promotes formation of SWI/SNF-mediated chromatin remodeling, is a tumor suppressor in gynecologic cancers.

Authors:  Bin Guan; Tian-Li Wang; Ie-Ming Shih
Journal:  Cancer Res       Date:  2011-09-07       Impact factor: 12.701

4.  ARID1B, a molecular suppressor of erythropoiesis, is essential for the prevention of Monge's disease.

Authors:  Andrew B Caldwell; Srinivasan Ramachandran; Priti Azad; Nathanael J Spann; Ali Akbari; Francisco C Villafuerte; Daniela Bermudez; Helen Zhao; Orit Poulsen; Dan Zhou; Vineet Bafna; Shankar Subramaniam; Gabriel G Haddad
Journal:  Exp Mol Med       Date:  2022-06-07       Impact factor: 12.153

Review 5.  ARID1A mutations in cancer: another epigenetic tumor suppressor?

Authors:  Jennifer N Wu; Charles W M Roberts
Journal:  Cancer Discov       Date:  2012-12-03       Impact factor: 39.397

6.  ARID1a-DNA interactions are required for promoter occupancy by SWI/SNF.

Authors:  Ronald L Chandler; Jennifer Brennan; Jonathan C Schisler; Daniel Serber; Cam Patterson; Terry Magnuson
Journal:  Mol Cell Biol       Date:  2012-11-05       Impact factor: 4.272

7.  The Chromatin Remodeling Component Arid1a Is a Suppressor of Spontaneous Mammary Tumors in Mice.

Authors:  Nithya Kartha; Lishuang Shen; Carolyn Maskin; Marsha Wallace; John C Schimenti
Journal:  Genetics       Date:  2016-06-08       Impact factor: 4.562

8.  Chromatin-Remodeling-Factor ARID1B Represses Wnt/β-Catenin Signaling.

Authors:  Georgia Vasileiou; Arif B Ekici; Steffen Uebe; Christiane Zweier; Juliane Hoyer; Hartmut Engels; Jürgen Behrens; André Reis; Michel V Hadjihannas
Journal:  Am J Hum Genet       Date:  2015-09-03       Impact factor: 11.025

9.  SS18 together with animal-specific factors defines human BAF-type SWI/SNF complexes.

Authors:  Evelien Middeljans; Xi Wan; Pascal W Jansen; Vikram Sharma; Hendrik G Stunnenberg; Colin Logie
Journal:  PLoS One       Date:  2012-03-19       Impact factor: 3.240

10.  ARID1B, a member of the human SWI/SNF chromatin remodeling complex, exhibits tumour-suppressor activities in pancreatic cancer cell lines.

Authors:  M Khursheed; J N Kolla; V Kotapalli; N Gupta; S Gowrishankar; S G Uppin; R A Sastry; S Koganti; C Sundaram; J R Pollack; M D Bashyam
Journal:  Br J Cancer       Date:  2013-05-09       Impact factor: 7.640

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