Literature DB >> 21116242

Multiple displacement amplification compromises quantitative analysis of metagenomes.

Suzan Yilmaz, Martin Allgaier, Philip Hugenholtz.   

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Year:  2010        PMID： 21116242     DOI： 10.1038/nmeth1210-943

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  6 in total

1.  Comparative metagenomics of microbial communities.

Authors:  Susannah Green Tringe; Christian von Mering; Arthur Kobayashi; Asaf A Salamov; Kevin Chen; Hwai W Chang; Mircea Podar; Jay M Short; Eric J Mathur; John C Detter; Peer Bork; Philip Hugenholtz; Edward M Rubin
Journal:  Science       Date:  2005-04-22       Impact factor: 47.728

2.  Multiple displacement amplification as a pre-polymerase chain reaction (pre-PCR) to process difficult to amplify samples and low copy number sequences from natural environments.

Authors:  Juan M Gonzalez; M Carmen Portillo; Cesareo Saiz-Jimenez
Journal:  Environ Microbiol       Date:  2005-07       Impact factor: 5.491

3.  Environmental whole-genome amplification to access microbial populations in contaminated sediments.

Authors:  Carl B Abulencia; Denise L Wyborski; Joseph A Garcia; Mircea Podar; Wenqiong Chen; Sherman H Chang; Hwai W Chang; David Watson; Eoin L Brodie; Terry C Hazen; Martin Keller
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

Review 4.  Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology.

Authors:  Erik K Binga; Roger S Lasken; Josh D Neufeld
Journal:  ISME J       Date:  2008-02-07       Impact factor: 10.302

Review 5.  Genomic DNA amplification by the multiple displacement amplification (MDA) method.

Authors:  Roger S Lasken
Journal:  Biochem Soc Trans       Date:  2009-04       Impact factor: 5.407

6.  Treephyler: fast taxonomic profiling of metagenomes.

Authors:  Fabian Schreiber; Peter Gumrich; Rolf Daniel; Peter Meinicke
Journal:  Bioinformatics       Date:  2010-02-19       Impact factor: 6.937
  6 in total
  95 in total

1.  Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA.

Authors:  Rachel Marine; Shawn W Polson; Jacques Ravel; Graham Hatfull; Daniel Russell; Matthew Sullivan; Fraz Syed; Michael Dumas; K Eric Wommack
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

Review 2.  Genomic sequencing of uncultured microorganisms from single cells.

Authors:  Roger S Lasken
Journal:  Nat Rev Microbiol       Date:  2012-09       Impact factor: 60.633

3.  Detecting viral genomes in the female urinary microbiome.

Authors:  Andrea Garretto; Krystal Thomas-White; Alan J Wolfe; Catherine Putonti
Journal:  J Gen Virol       Date:  2018-06-11       Impact factor: 3.891

4.  The human gut virome: inter-individual variation and dynamic response to diet.

Authors:  Samuel Minot; Rohini Sinha; Jun Chen; Hongzhe Li; Sue A Keilbaugh; Gary D Wu; James D Lewis; Frederic D Bushman
Journal:  Genome Res       Date:  2011-08-31       Impact factor: 9.043

5.  Amplification methods bias metagenomic libraries of uncultured single-stranded and double-stranded DNA viruses.

Authors:  Kyoung-Ho Kim; Jin-Woo Bae
Journal:  Appl Environ Microbiol       Date:  2011-09-16       Impact factor: 4.792

6.  Diversity of bacteria at healthy human conjunctiva.

Authors:  Qunfeng Dong; Jennifer M Brulc; Alfonso Iovieno; Brandon Bates; Aaron Garoutte; Darlene Miller; Kashi V Revanna; Xiang Gao; Dionysios A Antonopoulos; Vladlen Z Slepak; Valery I Shestopalov
Journal:  Invest Ophthalmol Vis Sci       Date:  2011-07-20       Impact factor: 4.799

7.  Template-dependent multiple displacement amplification for profiling human circulating RNA.

Authors:  Weihua Wang; Yi Ren; Yang Lu; Yuan Xu; Seth D Crosby; Adrian M Di Bisceglie; Xiaofeng Fan
Journal:  Biotechniques       Date:  2017-07-01       Impact factor: 1.993

8.  Impact of Contaminating DNA in Whole-Genome Amplification Kits Used for Metagenomic Shotgun Sequencing for Infection Diagnosis.

Authors:  Matthew Thoendel; Patricio Jeraldo; Kerryl E Greenwood-Quaintance; Janet Yao; Nicholas Chia; Arlen D Hanssen; Matthew P Abdel; Robin Patel
Journal:  J Clin Microbiol       Date:  2017-03-29       Impact factor: 5.948

9.  Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities.

Authors:  Migun Shakya; Christopher Quince; James H Campbell; Zamin K Yang; Christopher W Schadt; Mircea Podar
Journal:  Environ Microbiol       Date:  2013-02-06       Impact factor: 5.491

10.  The Number of Target Molecules of the Amplification Step Limits Accuracy and Sensitivity in Ultradeep-Sequencing Viral Population Studies.

Authors:  Romain Gallet; Frédéric Fabre; Yannis Michalakis; Stéphane Blanc
Journal:  J Virol       Date:  2017-07-27       Impact factor: 5.103
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