Literature DB >> 21114277

Importance of solvation in understanding the chiroptical spectra of natural products in solution phase: garcinia acid dimethyl ester.

Prasad L Polavarapu1, Giovanni Scalmani, Edward K Hawkins, Carmelo Rizzo, Neha Jeirath, Ibrahim Ibnusaud, Deenamma Habel, Divya Sadasivan Nair, Simimole Haleema.   

Abstract

The optical rotatory dispersion (ORD), electronic circular dichroism (ECD), and vibrational circular dichroism (VCD) spectra of (+)-garcinia acid dimethyl ester have been measured and analyzed by comparison with the corresponding spectra predicted by quantum chemical methods for (2S,3S)-garcinia acid dimethyl ester. For solution-phase calculations the recently developed continuous surface charge polarizable continuum model (PCM) has been used. It is found that gas-phase predictions and PCM predictions at the B3LYP/aug-cc-pVDZ level yield nearly mirror-image ECD spectra in the 190-250 nm region for the same absolute configuration and that gas-phase ECD predictions lead to incorrect absolute configuration. At the CAM-B3LYP/aug-cc-pVDZ level, however, gas-phase predictions and PCM predictions of ECD in the 190-250 nm region are not so different, but PCM predictions provide better agreement with the experimental observations. For carbonyl stretching vibrations, the vibrational band positions predicted at the B3LYP/aug-cc-pVDZ level in gas-phase calculations differ significantly from the corresponding experimentally observed band positions, and this discrepancy has also been corrected by the use of PCM. In addition, the solution-phase VCD predictions provided better agreement (with experimental VCD observations) than gas-phase VCD predictions. These observations underscore the importance of including solvent effects in quantum chemical calculations of chiroptical spectroscopic properties.

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Year:  2010        PMID: 21114277      PMCID: PMC3699186          DOI: 10.1021/np100512w

Source DB:  PubMed          Journal:  J Nat Prod        ISSN: 0163-3864            Impact factor:   4.050


  23 in total

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Authors:  Giovanni Scalmani; Michael J Frisch
Journal:  J Chem Phys       Date:  2010-03-21       Impact factor: 3.488

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Journal:  Chem Rev       Date:  2005-08       Impact factor: 60.622

3.  Solvent effects on Raman optical activity spectra calculated using the polarizable continuum model.

Authors:  Magdalena Pecul; Ewa Lamparska; Chiara Cappelli; Luca Frediani; Kenneth Ruud
Journal:  J Phys Chem A       Date:  2006-03-02       Impact factor: 2.781

4.  Why is it important to simultaneously use more than one chiroptical spectroscopic method for determining the structures of chiral molecules?

Authors:  Prasad L Polavarapu
Journal:  Chirality       Date:  2008-05-15       Impact factor: 2.437

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Authors:  Hiroyuki Hida; Takashi Yamada; Yasuhiro Yamada
Journal:  Appl Microbiol Biotechnol       Date:  2006-10-17       Impact factor: 4.813

6.  Effect of (-)-hydroxycitrate upon the accumulation of lipid in the rat. I. Lipogenesis.

Authors:  A C Sullivan; J Triscari; J G Hamilton; O N Miller; V R Wheatley
Journal:  Lipids       Date:  1974-02       Impact factor: 1.880

7.  Polarizable continuum model study of solvent effects on electronic circular dichroism parameters.

Authors:  Magdalena Pecul; Domenico Marchesan; Kenneth Ruud; Sonia Coriani
Journal:  J Chem Phys       Date:  2005-01-08       Impact factor: 3.488

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Authors:  S B Heymsfield; D B Allison; J R Vasselli; A Pietrobelli; D Greenfield; C Nunez
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9.  Solvent effects on IR and VCD spectra of natural products: an experimental and theoretical VCD study of pulegone.

Authors:  Elke Debie; Patrick Bultinck; Wouter Herrebout; Benjamin van der Veken
Journal:  Phys Chem Chem Phys       Date:  2008-05-07       Impact factor: 3.676

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Journal:  J Chem Theory Comput       Date:  2005-05       Impact factor: 6.006

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  6 in total

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Journal:  J Phys Chem A       Date:  2011-05-13       Impact factor: 2.781

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Authors:  Muchtaridi Muchtaridi; Rina Fajri Nuwarda; Emmy Hainida Khairul Ikram; Aisyah Saad Abdul Rahim; Amirah Mohd Gazzali; Habibah A Wahab
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6.  Diverse Secondary Metabolites from the Marine-Derived Fungus Dichotomomyces cejpii F31-1.

Authors:  Yan-Xiu Chen; Meng-Yang Xu; Hou-Jin Li; Kun-Jiao Zeng; Wen-Zhe Ma; Guo-Bao Tian; Jun Xu; De-Po Yang; Wen-Jian Lan
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  6 in total

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