Literature DB >> 21107708

The discovery approaches and detection methods of microRNAs.

Yong Huang1, Quan Zou, Sheng Peng Wang, Shun Ming Tang, Guo Zheng Zhang, Xing Jia Shen.   

Abstract

MicroRNAs (miRNAs) are small, highly conserved, non-coding RNAs that regulate gene expression of target mRNAs through cleavage or translational inhibition. Computer-based approaches for miRNA gene identification are being considered as indispensable in miRNAs research. Similarly, experimental approaches for detection of miRNAs are crucial to the testing and validating of computational algorithms. The detection of miRNAs in tissues or cells can supply valuable information for investigating the biological function of these molecules. Selective and highly sensitive detection methods will pave the way for extended understanding of miRNA function within organisms. In this review, we summarize the various computational methods for identification of miRNAs as well as the methodologies that have been developed to detection miRNAs.

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Year:  2010        PMID: 21107708     DOI: 10.1007/s11033-010-0532-1

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  76 in total

Review 1.  Role of microRNAs in plant and animal development.

Authors:  James C Carrington; Victor Ambros
Journal:  Science       Date:  2003-07-18       Impact factor: 47.728

2.  Quantitation of microRNAs using a modified Invader assay.

Authors:  Hatim T Allawi; James E Dahlberg; Sarah Olson; Elsebet Lund; Marilyn Olson; Wu-Po Ma; Tsetska Takova; Bruce P Neri; Victor I Lyamichev
Journal:  RNA       Date:  2004-07       Impact factor: 4.942

3.  Simple, quantitative primer-extension PCR assay for direct monitoring of microRNAs and short-interfering RNAs.

Authors:  Christopher K Raymond; Brian S Roberts; Phillip Garrett-Engele; Lee P Lim; Jason M Johnson
Journal:  RNA       Date:  2005-11       Impact factor: 4.942

4.  Bio-informatic trends for the determination of miRNA-target interactions in mammals.

Authors:  Jonathon Doran; William M Strauss
Journal:  DNA Cell Biol       Date:  2007-05       Impact factor: 3.311

5.  Cloning and identification of microRNAs in bovine alveolar macrophages.

Authors:  Guangxian Xu; Yan Zhang; Hao Jia; Juan Li; Xiaoming Liu; John F Engelhardt; Yujiong Wang
Journal:  Mol Cell Biochem       Date:  2009-06-09       Impact factor: 3.396

6.  Discovery of functional miRNA-mRNA regulatory modules with computational methods.

Authors:  Bing Liu; Jiuyong Li; Anna Tsykin
Journal:  J Biomed Inform       Date:  2009-01-30       Impact factor: 6.317

Review 7.  Metagenomic pyrosequencing and microbial identification.

Authors:  Joseph F Petrosino; Sarah Highlander; Ruth Ann Luna; Richard A Gibbs; James Versalovic
Journal:  Clin Chem       Date:  2009-03-05       Impact factor: 8.327

8.  Carbodiimide-mediated cross-linking of RNA to nylon membranes improves the detection of siRNA, miRNA and piRNA by northern blot.

Authors:  Gurman Singh Pall; Carles Codony-Servat; Jane Byrne; Leigh Ritchie; Andrew Hamilton
Journal:  Nucleic Acids Res       Date:  2007-04-02       Impact factor: 16.971

Review 9.  Current tools for the identification of miRNA genes and their targets.

Authors:  N D Mendes; A T Freitas; M-F Sagot
Journal:  Nucleic Acids Res       Date:  2009-03-18       Impact factor: 16.971

10.  Learning from positive examples when the negative class is undetermined--microRNA gene identification.

Authors:  Malik Yousef; Segun Jung; Louise C Showe; Michael K Showe
Journal:  Algorithms Mol Biol       Date:  2008-01-28       Impact factor: 1.405

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  17 in total

1.  Computational identification and evolutionary relationships of the microRNA gene cluster miR-71/2 in protostomes.

Authors:  Matheus de Souza Gomes; Mark T A Donoghue; Mohankumar Muniyappa; Roberta Verciano Pereira; Renata Guerra-Sá; Charles Spillane
Journal:  J Mol Evol       Date:  2013-06-06       Impact factor: 2.395

2.  Development of a robust, low cost stem-loop real-time quantification PCR technique for miRNA expression analysis.

Authors:  Samira Mohammadi-Yeganeh; Mahdi Paryan; Siamak Mirab Samiee; Masoud Soleimani; Ehsan Arefian; Keyhan Azadmanesh; Ehsan Mostafavi; Reza Mahdian; Morteza Karimipoor
Journal:  Mol Biol Rep       Date:  2013-01-10       Impact factor: 2.316

3.  MicroRNA-22 targeting CBP protects against myocardial ischemia-reperfusion injury through anti-apoptosis in rats.

Authors:  Jian Yang; Lihua Chen; Jun Yang; Jiawang Ding; Song Li; Hui Wu; Jing Zhang; Zhixing Fan; Wusong Dong; Xinxin Li
Journal:  Mol Biol Rep       Date:  2013-12-12       Impact factor: 2.316

4.  Single-Molecule Sensor for High-Confidence Detection of miRNA.

Authors:  Kalani M Wijesinghe; Mazhar A Kanak; J Chuck Harrell; Soma Dhakal
Journal:  ACS Sens       Date:  2022-03-21       Impact factor: 7.711

5.  Computational identification and characterization of novel microRNA in the mammary gland of dairy goat (Capra hircus).

Authors:  Bo Qu; Youwen Qiu; Zhen Zhen; Feng Zhao; Chunmei Wang; Yingjun Cui; Qizhang Li; Li Zhang
Journal:  J Genet       Date:  2016-09       Impact factor: 1.166

6.  Novel miRNAs in the control of arsenite levels in rice.

Authors:  Qingpo Liu
Journal:  Funct Integr Genomics       Date:  2012-05-15       Impact factor: 3.410

7.  Highly Potent GalNAc-Conjugated Tiny LNA Anti-miRNA-122 Antisense Oligonucleotides.

Authors:  Tsuyoshi Yamamoto; Yahiro Mukai; Fumito Wada; Chisato Terada; Yukina Kayaba; Kaho Oh; Asako Yamayoshi; Satoshi Obika; Mariko Harada-Shiba
Journal:  Pharmaceutics       Date:  2021-05-31       Impact factor: 6.321

8.  Multiclass relevance units machine: benchmark evaluation and application to small ncRNA discovery.

Authors:  Mark Menor; Kyungim Baek; Guylaine Poisson
Journal:  BMC Genomics       Date:  2013-02-15       Impact factor: 3.969

9.  A Review of Computational Tools in microRNA Discovery.

Authors:  Clarissa P C Gomes; Ji-Hoon Cho; Leroy Hood; Octávio L Franco; Rinaldo W Pereira; Kai Wang
Journal:  Front Genet       Date:  2013-05-15       Impact factor: 4.599

10.  Human hepatocellular carcinoma cell-specific miRNAs reveal the differential expression of miR-24 and miR-27a in cirrhotic/non-cirrhotic HCC.

Authors:  Alessandro Salvi; Edoardo Abeni; Nazario Portolani; Sergio Barlati; Giuseppina De Petro
Journal:  Int J Oncol       Date:  2012-11-28       Impact factor: 5.650

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