Literature DB >> 21104763

NMR chemical shifts as a tool to analyze first principles molecular dynamics simulations in condensed phases: the case of liquid water.

Douglas R Banyai1, Tatiana Murakhtina, Daniel Sebastiani.   

Abstract

We present (1)H NMR chemical shift calculations of liquid water based on first principles molecular dynamics simulations under periodic boundary conditions. We focus on the impact of computational parameters on the structural and spectroscopic data, which is an important question for understanding how sensitive the computed (1)H NMR resonances are upon variation of the simulation setup. In particular, we discuss the influence of the exchange-correlation functional and the size of the basis set, the choice for the fictitious electronic mass and the use of pseudopotentials for the nuclear magnetic resonance (NMR) calculation on one hand and the underlying Car-Parrinello-type molecular dynamics simulations on the other hand. Our findings show that the direct effect of these parameters on (1)H shifts is not big, whereas the indirect dependence via the structural data is more important. The (1)H NMR chemical shifts clearly reflect the induced structural changes, illustrating once again the sensitivity of (1)H NMR observables on small changes in the local chemical structure of complex hydrogen-bonded liquids.
Copyright © 2010 John Wiley & Sons, Ltd.

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Year:  2010        PMID: 21104763     DOI: 10.1002/mrc.2620

Source DB:  PubMed          Journal:  Magn Reson Chem        ISSN: 0749-1581            Impact factor:   2.447


  5 in total

1.  Nuclear quantum effects and hydrogen bond fluctuations in water.

Authors:  Michele Ceriotti; Jérôme Cuny; Michele Parrinello; David E Manolopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-06       Impact factor: 11.205

2.  Six-site polarizable model of water based on the classical Drude oscillator.

Authors:  Wenbo Yu; Pedro E M Lopes; Benoît Roux; Alexander D MacKerell
Journal:  J Chem Phys       Date:  2013-01-21       Impact factor: 3.488

3.  Improved Quantum Chemical NMR Chemical Shift Prediction of Metabolites in Aqueous Solution toward the Validation of Unknowns.

Authors:  Felix Hoffmann; Da-Wei Li; Daniel Sebastiani; Rafael Brüschweiler
Journal:  J Phys Chem A       Date:  2017-04-17       Impact factor: 2.781

Review 4.  A Review on Combination of Ab Initio Molecular Dynamics and NMR Parameters Calculations.

Authors:  Anna Helena Mazurek; Łukasz Szeleszczuk; Dariusz Maciej Pisklak
Journal:  Int J Mol Sci       Date:  2021-04-22       Impact factor: 5.923

5.  A detailed computational investigation on the structural and spectroscopic properties of propolisbenzofuran B.

Authors:  Morteza Rouhani
Journal:  Heliyon       Date:  2019-10-08
  5 in total

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