Literature DB >> 21103600

Thermodynamics of liquids: standard molar entropies and heat capacities of common solvents from 2PT molecular dynamics.

Tod A Pascal1, Shiang-Tai Lin, William A Goddard.   

Abstract

We validate here the Two-Phase Thermodynamics (2PT) method for calculating the standard molar entropies and heat capacities of common liquids. In 2PT, the thermodynamics of the system is related to the total density of states (DoS), obtained from the Fourier Transform of the velocity autocorrelation function. For liquids this DoS is partitioned into a diffusional component modeled as diffusion of a hard sphere gas plus a solid component for which the DoS(υ) → 0 as υ→ 0 as for a Debye solid. Thermodynamic observables are obtained by integrating the DoS with the appropriate weighting functions. In the 2PT method, two parameters are extracted from the DoS self-consistently to describe diffusional contributions: the fraction of diffusional modes, f, and DoS(0). This allows 2PT to be applied consistently and without re-parameterization to simulations of arbitrary liquids. We find that the absolute entropy of the liquid can be determined accurately from a single short MD trajectory (20 ps) after the system is equilibrated, making it orders of magnitude more efficient than commonly used perturbation and umbrella sampling methods. Here, we present the predicted standard molar entropies for fifteen common solvents evaluated from molecular dynamics simulations using the AMBER, GAFF, OPLS AA/L and Dreiding II forcefields. Overall, we find that all forcefields lead to good agreement with experimental and previous theoretical values for the entropy and very good agreement in the heat capacities. These results validate 2PT as a robust and efficient method for evaluating the thermodynamics of liquid phase systems. Indeed 2PT might provide a practical scheme to improve the intermolecular terms in forcefields by comparing directly to thermodynamic properties.

Mesh:

Substances:

Year:  2010        PMID: 21103600     DOI: 10.1039/c0cp01549k

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  17 in total

1.  Thermodynamic insight into spontaneous hydration and rapid water permeation in aquaporins.

Authors:  A Barati Farimani; N R Aluru; Emad Tajkhorshid
Journal:  Appl Phys Lett       Date:  2014-08-25       Impact factor: 3.791

2.  Understanding Missing Entropy in Coarse-Grained Systems: Addressing Issues of Representability and Transferability.

Authors:  Jaehyeok Jin; Alexander J Pak; Gregory A Voth
Journal:  J Phys Chem Lett       Date:  2019-07-30       Impact factor: 6.475

3.  Determining the hydronium pK[Formula: see text] at platinum surfaces and the effect on pH-dependent hydrogen evolution reaction kinetics.

Authors:  Guangyan Zhong; Tao Cheng; Aamir Hassan Shah; Chengzhang Wan; Zhihong Huang; Sibo Wang; Tianle Leng; Yu Huang; William A Goddard; Xiangfeng Duan
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-19       Impact factor: 12.779

4.  Edge-On (Cellulose II) and Face-On (Cellulose I) Adsorption of Cellulose Nanocrystals at the Oil-Water Interface: A Combined Entropic and Enthalpic Process.

Authors:  Somia Haouache; Yu Chen; Clara Jimenez-Saelices; Fabrice Cousin; Pan Chen; Yoshiharu Nishiyama; François Jerome; Isabelle Capron
Journal:  Biomacromolecules       Date:  2022-08-31       Impact factor: 6.978

5.  Hydration Dynamics of a Peripheral Membrane Protein.

Authors:  Olivier Fisette; Christopher Päslack; Ryan Barnes; J Mario Isas; Ralf Langen; Matthias Heyden; Songi Han; Lars V Schäfer
Journal:  J Am Chem Soc       Date:  2016-09-02       Impact factor: 15.419

6.  Force Field Benchmark of Organic Liquids: Density, Enthalpy of Vaporization, Heat Capacities, Surface Tension, Isothermal Compressibility, Volumetric Expansion Coefficient, and Dielectric Constant.

Authors:  Carl Caleman; Paul J van Maaren; Minyan Hong; Jochen S Hub; Luciano T Costa; David van der Spoel
Journal:  J Chem Theory Comput       Date:  2011-12-07       Impact factor: 6.006

7.  Interlayer water regulates the bio-nano interface of a β-sheet protein stacking on graphene.

Authors:  Wenping Lv; Guiju Xu; Hongyan Zhang; Xin Li; Shengju Liu; Huan Niu; Dongsheng Xu; Ren'an Wu
Journal:  Sci Rep       Date:  2015-01-05       Impact factor: 4.379

8.  Signatures of Solvation Thermodynamics in Spectra of Intermolecular Vibrations.

Authors:  Rasmus A X Persson; Viren Pattni; Anurag Singh; Stefan M Kast; Matthias Heyden
Journal:  J Chem Theory Comput       Date:  2017-08-25       Impact factor: 6.006

9.  Distinct Protein Hydration Water Species Defined by Spatially Resolved Spectra of Intermolecular Vibrations.

Authors:  Viren Pattni; Tatiana Vasilevskaya; Walter Thiel; Matthias Heyden
Journal:  J Phys Chem B       Date:  2017-07-11       Impact factor: 2.991

10.  Sub-nanometer confinement enables facile condensation of gas electrolyte for low-temperature batteries.

Authors:  Guorui Cai; Yijie Yin; Dawei Xia; Amanda A Chen; John Holoubek; Jonathan Scharf; Yangyuchen Yang; Ki Hwan Koh; Mingqian Li; Daniel M Davies; Matthew Mayer; Tae Hee Han; Ying Shirley Meng; Tod A Pascal; Zheng Chen
Journal:  Nat Commun       Date:  2021-06-07       Impact factor: 14.919

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.