Literature DB >> 21095879

Learning cellular texture features in microscopic cancer cell images for automated cell-detection.

Tomas Kazmar1, Matej Smid, Margit Fuchs, Birgit Luber, Julian Mattes.   

Abstract

In this paper we present a new approach for automated cell detection in single frames of 2D microscopic phase contrast images of cancer cells which is based on learning cellular texture features. The main challenge addressed in this paper is to deal with clusters of cells where each cell has a rather complex appearance composed of sub-regions with different texture features. Our approach works on two different levels of abstraction. First, we apply statistical learning to learn 6 different types of different local cellular texture features, classify each pixel according to them and we obtain an image partition composed of 6 different pixel categories. Based on this partitioned image we decide in a second step if pre-selected seeds belong to the same cell or not. Experimental results show the high accuracy of the proposed method and especially average precision above 95%.

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Year:  2010        PMID: 21095879     DOI: 10.1109/IEMBS.2010.5626299

Source DB:  PubMed          Journal:  Annu Int Conf IEEE Eng Med Biol Soc        ISSN: 2375-7477


  4 in total

1.  Segmentation of phase contrast microscopy images based on multi-scale local Basic Image Features histograms.

Authors:  N Jaccard; N Szita; L D Griffin
Journal:  Comput Methods Biomech Biomed Eng Imaging Vis       Date:  2017-04-07

2.  Evaluation of epidermal growth factor receptor signaling effects in gastric cancer cell lines by detailed motility-focused phenotypic characterization linked with molecular analysis.

Authors:  Simone Keller; Julia Kneissl; Verena Grabher-Meier; Stefan Heindl; Jan Hasenauer; Dieter Maier; Julian Mattes; Peter Winter; Birgit Luber
Journal:  BMC Cancer       Date:  2017-12-13       Impact factor: 4.430

3.  MET as resistance factor for afatinib therapy and motility driver in gastric cancer cells.

Authors:  Karolin Ebert; Julian Mattes; Thomas Kunzke; Gwen Zwingenberger; Birgit Luber
Journal:  PLoS One       Date:  2019-09-26       Impact factor: 3.240

4.  Determining the effects of trastuzumab, cetuximab and afatinib by phosphoprotein, gene expression and phenotypic analysis in gastric cancer cell lines.

Authors:  Karolin Ebert; Gwen Zwingenberger; Elena Barbaria; Simone Keller; Corinna Heck; Rouven Arnold; Vanessa Hollerieth; Julian Mattes; Robert Geffers; Elba Raimúndez; Jan Hasenauer; Birgit Luber
Journal:  BMC Cancer       Date:  2020-10-28       Impact factor: 4.430

  4 in total

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