Literature DB >> 21093986

Compressive auto-indexing in femtosecond nanocrystallography.

Filipe R N C Maia1, Chao Yang, Stefano Marchesini.   

Abstract

Ultrafast nanocrystallography has the potential to revolutionize biology by enabling structural elucidation of proteins for which it is possible to grow crystals with 10 or fewer unit cells on the side. The success of nanocrystallography depends on robust orientation-determination procedures that allow us to average diffraction data from multiple nanocrystals to produce a three-dimensional (3D) diffraction data volume with a high signal-to-noise ratio. Such a 3D diffraction volume can then be phased using standard crystallographic techniques. "Indexing" algorithms used in crystallography enable orientation determination of diffraction data from a single crystal when a relatively large number of reflections are recorded. Here we show that it is possible to obtain the exact lattice geometry from a smaller number of measurements than standard approaches using a basis pursuit solver. Published by Elsevier B.V.

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Year:  2010        PMID: 21093986     DOI: 10.1016/j.ultramic.2010.10.016

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  3 in total

1.  Structure-factor analysis of femtosecond microdiffraction patterns from protein nanocrystals.

Authors:  Richard A Kirian; Thomas A White; James M Holton; Henry N Chapman; Petra Fromme; Anton Barty; Lukas Lomb; Andrew Aquila; Filipe R N C Maia; Andrew V Martin; Raimund Fromme; Xiaoyu Wang; Mark S Hunter; Kevin E Schmidt; John C H Spence
Journal:  Acta Crystallogr A       Date:  2011-02-16       Impact factor: 2.290

2.  Indexing amyloid peptide diffraction from serial femtosecond crystallography: new algorithms for sparse patterns.

Authors:  Aaron S Brewster; Michael R Sawaya; Jose Rodriguez; Johan Hattne; Nathaniel Echols; Heather T McFarlane; Duilio Cascio; Paul D Adams; David S Eisenberg; Nicholas K Sauter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-23

3.  SPIND: a reference-based auto-indexing algorithm for sparse serial crystallography data.

Authors:  Chufeng Li; Xuanxuan Li; Richard Kirian; John C H Spence; Haiguang Liu; Nadia A Zatsepin
Journal:  IUCrJ       Date:  2019-01-01       Impact factor: 4.769

  3 in total

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