Literature DB >> 21087009

Serendipitous discovery of α-hydroxyalkyl esters as β-lactamase substrates.

Ryan B Pelto1, R F Pratt.   

Abstract

O-(1-Carboxy-1-alkyloxycarbonyl) hydroxamates were found to spontaneously decarboxylate in aqueous neutral buffer to form O-(2-hydroxyalkylcarbonyl) hydroxamates. While the former molecules do not react rapidly with serine β-lactamases, the latter are quite good substrates of representative class A and C, but not D, enzymes, and particularly of a class C enzyme. The enzymes catalyze hydrolysis of these compounds to a mixture of the α-hydroxy acid and hydroxamate. Analogous compounds containing aryloxy leaving groups rather that hydroxamates are also substrates. Structure-activity experiments showed that the α-hydroxyl group was required for any substantial substrate activity. Although both d- and l-α-hydroxy acid derivatives were substrates, the former were preferred. The response of the class C activity to pH and to alternative nucleophiles (methanol and d-phenylalanine) suggested that the same active site functional groups participated in catalysis as for classical substrates. Molecular modeling was employed to explore how the α-hydroxy group might interact with the class C β-lactamase active site. Incorporation of the α-hydroxyalkyl moiety into novel inhibitors will be of considerable interest.

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Year:  2010        PMID: 21087009      PMCID: PMC2999657          DOI: 10.1021/bi101071r

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  34 in total

1.  O-aryloxycarbonyl hydroxamates: new beta-lactamase inhibitors that cross-link the active site.

Authors:  Pauline N Wyrembak; Kerim Babaoglu; Ryan B Pelto; Brian K Shoichet; R F Pratt
Journal:  J Am Chem Soc       Date:  2007-07-12       Impact factor: 15.419

2.  Hydrogen bonds with pi-acceptors in proteins: frequencies and role in stabilizing local 3D structures.

Authors:  T Steiner; G Koellner
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

3.  Synthesis and characterization of chiral N-O turns induced by alpha-aminoxy acids.

Authors:  D Yang; B Li; F F Ng; Y L Yan; J Qu; Y D Wu
Journal:  J Org Chem       Date:  2001-11-02       Impact factor: 4.354

4.  Kinetics and mechanism of beta-lactamase inhibition by phosphonamidates: the quest for a proton.

Authors:  J Rahil; R F Pratt
Journal:  Biochemistry       Date:  1993-10-12       Impact factor: 3.162

5.  Solid phase synthesis and binding affinity of peptidyl transferase transition state mimics containing 2'-OH at P-site position A76.

Authors:  Joshua S Weinger; David Kitchen; Stephen A Scaringe; Scott A Strobel; Gregory W Muth
Journal:  Nucleic Acids Res       Date:  2004-03-03       Impact factor: 16.971

6.  Kinetics and mechanism of inhibition of a serine beta-lactamase by O-aryloxycarbonyl hydroxamates.

Authors:  Ryan B Pelto; R F Pratt
Journal:  Biochemistry       Date:  2008-10-23       Impact factor: 3.162

7.  Inhibition of class A and C beta-lactamases by diaroyl phosphates.

Authors:  Sudipta Majumdar; R F Pratt
Journal:  Biochemistry       Date:  2009-09-08       Impact factor: 3.162

8.  Natural abundance nitrogen-15 nuclear magnetic resonance spectral studies on selected donors.

Authors:  N Someswara Rao; G Babu Rao; B N Murthy; M Maria Das; T Prabhakar; M Lalitha
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2002-10       Impact factor: 4.098

9.  Nanomolar inhibitors of AmpC beta-lactamase.

Authors:  Federica Morandi; Emilia Caselli; Stefania Morandi; Pamela J Focia; Jesús Blázquez; Brian K Shoichet; Fabio Prati
Journal:  J Am Chem Soc       Date:  2003-01-22       Impact factor: 15.419

10.  Breakdown of the stereospecificity of DD-peptidases and beta-lactamases with thiolester substrates.

Authors:  C Damblon; G H Zhao; M Jamin; P Ledent; A Dubus; M Vanhove; X Raquet; L Christiaens; J M Frère
Journal:  Biochem J       Date:  1995-07-15       Impact factor: 3.857

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  1 in total

1.  Kinetics and stereochemistry of hydrolysis of an N-(phenylacetyl)-α-hydroxyglycine ester catalyzed by serine β-lactamases and DD-peptidases.

Authors:  Ryan B Pelto; R F Pratt
Journal:  Org Biomol Chem       Date:  2012-09-28       Impact factor: 3.876

  1 in total

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