Literature DB >> 21084312

Product-assisted catalysis as the basis of the reaction specificity of threonine synthase.

Takeshi Murakawa1, Yasuhiro Machida, Hideyuki Hayashi.   

Abstract

Threonine synthase (TS), which is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, catalyzes the elimination of the γ-phosphate group from O-phospho-L-homoserine (OPHS) and the subsequent addition of water at Cβ to form L-threonine. The catalytic course of TS is the most complex among the PLP enzymes, and it is an intriguing problem how the elementary steps are controlled in TS to carry out selective reactions. When L-vinylglycine was added to Thermus thermophilus HB8 TS in the presence of phosphate, L-threonine was formed with k(cat) and reaction specificity comparable with those when OPHS was used as the substrate. However, in the absence of phosphate or when sulfate was used in place of phosphate, only the side reaction product, α-ketobutyrate, was formed. Global analysis of the spectral changes in the reaction of TS with L-threonine showed that compared with the more acidic sulfate ion, the phosphate ion decreased the energy levels of the transition states of the addition of water at the Cβ of the PLP-α-aminocrotonate aldimine (AC) and the transaldimination to form L-threonine. The x-ray crystallographic analysis of TS complexed with an analog for AC gave a distinct electron density assigned to the phosphate ion derived from the solvent near the Cβ of the analog. These results indicated that the phosphate ion released from OPHS by γ-elimination acts as the base catalyst for the addition of water at Cβ of AC, thereby providing the basis of the reaction specificity. The phosphate ion is also considered to accelerate the protonation/deprotonation at Cγ.

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Year:  2010        PMID: 21084312      PMCID: PMC3024773          DOI: 10.1074/jbc.M110.186205

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  26 in total

1.  Characterization of recombinant Arabidopsis thaliana threonine synthase.

Authors:  B Laber; W Maurer; C Hanke; S Gräfe; S Ehlert; A Messerschmidt; T Clausen
Journal:  Eur J Biochem       Date:  1999-07

2.  XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density.

Authors:  D E McRee
Journal:  J Struct Biol       Date:  1999 Apr-May       Impact factor: 2.867

3.  Product-assisted catalysis in base-excision DNA repair.

Authors:  J Christopher Fromme; Steven D Bruner; Wei Yang; Martin Karplus; Gregory L Verdine
Journal:  Nat Struct Biol       Date:  2003-03

4.  Detection of intermediates in reactions catalyzed by PLP-dependent enzymes: O-acetylserine sulfhydrylase and serine-glyoxalate aminotransferase.

Authors:  William E Karsten; Paul F Cook
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

5.  L-Vinylglycine is an alternative substrate as well as a mechanism-based inhibitor of 1-aminocyclopropane-1-carboxylate synthase.

Authors:  L Feng; J F Kirsch
Journal:  Biochemistry       Date:  2000-03-14       Impact factor: 3.162

6.  Structure and function of threonine synthase from yeast.

Authors:  Marta Garrido-Franco; Stephan Ehlert; Albrecht Messerschmidt; Snezan Marinkovic'; Robert Huber; Bernd Laber; Gleb P Bourenkov; Tim Clausen
Journal:  J Biol Chem       Date:  2001-12-26       Impact factor: 5.157

7.  The reaction of yeast cystathionine beta-synthase is rate-limited by the conversion of aminoacrylate to cystathionine.

Authors:  K H Jhee; D Niks; P McPhie; M F Dunn; E W Miles
Journal:  Biochemistry       Date:  2001-09-11       Impact factor: 3.162

8.  Crystal structure of threonine synthase from Arabidopsis thaliana.

Authors:  K Thomazeau; G Curien; R Dumas; V Biou
Journal:  Protein Sci       Date:  2001-03       Impact factor: 6.725

9.  Proton transfers in the beta-reaction catalyzed by tryptophan synthase.

Authors:  Oscar Hur; Dimitri Niks; Patricia Casino; Michael F Dunn
Journal:  Biochemistry       Date:  2002-08-06       Impact factor: 3.162

10.  Crystal structures of threonine synthase from Thermus thermophilus HB8: conformational change, substrate recognition, and mechanism.

Authors:  Rie Omi; Masaru Goto; Ikuko Miyahara; Hiroyuki Mizuguchi; Hideyuki Hayashi; Hiroyuki Kagamiyama; Ken Hirotsu
Journal:  J Biol Chem       Date:  2003-09-02       Impact factor: 5.157

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  5 in total

1.  Molecular Basis of Bacillus subtilis ATCC 6633 Self-Resistance to the Phosphono-oligopeptide Antibiotic Rhizocticin.

Authors:  Nektaria Petronikolou; Manuel A Ortega; Svetlana A Borisova; Satish K Nair; William W Metcalf
Journal:  ACS Chem Biol       Date:  2019-03-13       Impact factor: 5.100

2.  Evolutionary analysis of a novel zinc ribbon in the N-terminal region of threonine synthase.

Authors:  Gurmeet Kaur; Srikrishna Subramanian
Journal:  Cell Cycle       Date:  2017-08-18       Impact factor: 4.534

Review 3.  Controlling reaction specificity in pyridoxal phosphate enzymes.

Authors:  Michael D Toney
Journal:  Biochim Biophys Acta       Date:  2011-06-06

4.  X-Ray snapshots of a pyridoxal enzyme: a catalytic mechanism involving concerted [1,5]-hydrogen sigmatropy in methionine γ-lyase.

Authors:  Dan Sato; Tomoo Shiba; Tsuyoshi Karaki; Wataru Yamagata; Tomoyoshi Nozaki; Takashi Nakazawa; Shigeharu Harada
Journal:  Sci Rep       Date:  2017-07-07       Impact factor: 4.379

5.  Significant reduction in errors associated with nonbonded contacts in protein crystal structures: automated all-atom refinement with PrimeX.

Authors:  Jeffrey A Bell; Kenneth L Ho; Ramy Farid
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-07-17
  5 in total

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