Literature DB >> 21082721

Synthetic symmetrization in the crystallization and structure determination of CelA from Thermotoga maritima.

G Jason Forse1, Nina Ram, D Rey Banatao, Duilio Cascio, Michael R Sawaya, Heath E Klock, Scott A Lesley, Todd O Yeates.   

Abstract

Protein crystallization continues to be a major bottleneck in X-ray crystallography. Previous studies suggest that symmetric proteins, such as homodimers, might crystallize more readily than monomeric proteins or asymmetric complexes. Proteins that are naturally monomeric can be made homodimeric artificially. Our approach is to create homodimeric proteins by introducing single cysteines into the protein of interest, which are then oxidized to form a disulfide bond between the two monomers. By introducing the single cysteine at different sequence positions, one can produce a variety of synthetically dimerized versions of a protein, with each construct expected to exhibit its own crystallization behavior. In earlier work, we demonstrated the potential utility of the approach using T4 lysozyme as a model system. Here we report the successful application of the method to Thermotoga maritima CelA, a thermophilic endoglucanase enzyme with low sequence identity to proteins with structures previously reported in the Protein Data Bank. This protein had resisted crystallization in its natural monomeric form, despite a broad survey of crystallization conditions. The synthetic dimerization of the CelA mutant D188C yielded well-diffracting crystals with molecules in a packing arrangement that would not have occurred with native, monomeric CelA. A 2.4 Å crystal structure was determined by single anomalous dispersion using a seleno-methionine derivatized protein. The results support the notion that synthetic symmetrization can be a useful approach for enlarging the search space for crystallizing monomeric proteins or asymmetric complexes.

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Year:  2011        PMID: 21082721      PMCID: PMC3047073          DOI: 10.1002/pro.550

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  51 in total

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5.  The X-ray crystal structure of the Trichoderma reesei family 12 endoglucanase 3, Cel12A, at 1.9 A resolution.

Authors:  M Sandgren; A Shaw; T H Ropp; S Wu; R Bott; A D Cameron; J Ståhlberg; C Mitchinson; T A Jones
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8.  The structure of Rhodothermus marinus Cel12A, a highly thermostable family 12 endoglucanase, at 1.8 A resolution.

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10.  Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline.

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Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-22       Impact factor: 11.205

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2.  An approach to crystallizing proteins by metal-mediated synthetic symmetrization.

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3.  Redefining Protein Interfaces within Protein Single Crystals with DNA.

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4.  Co-crystallization with diabodies: A case study for the introduction of synthetic symmetry.

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5.  Split green fluorescent protein as a modular binding partner for protein crystallization.

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6.  Site-Directed Mutagenesis of a Hyperthermophilic Endoglucanase Cel12B from Thermotoga maritima Based on Rational Design.

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7.  Structural analysis of β-glucosidase mutants derived from a hyperthermophilic tetrameric structure.

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Review 8.  Protein stability: a crystallographer's perspective.

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