Literature DB >> 21082425

A guide to UniProt for protein scientists.

Claire O'Donovan1, Rolf Apweiler.   

Abstract

One of the essential requirements of the proteomics community is a high quality annotated nonredundant protein sequence database with stable identifiers and an archival service to enable protein identification and characterization. The scope of this chapter is to illustrate how Universal Protein Resource (UniProt) (The UniProt Consortium, Nucleic Acids Res. 38:D142-D148, 2010) can be best utilized for proteomics purposes with a particular focus on exploiting the knowledge captured in the UniProt databases, the services provided and the availability of complete proteomes.

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Year:  2011        PMID: 21082425     DOI: 10.1007/978-1-60761-977-2_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  8 in total

1.  Amino acid determinants of substrate selectivity in the Trypanosoma brucei sphingolipid synthase family.

Authors:  Michael A Goren; Brian G Fox; James D Bangs
Journal:  Biochemistry       Date:  2011-09-22       Impact factor: 3.162

Review 2.  Membrane vesicles, current state-of-the-art: emerging role of extracellular vesicles.

Authors:  Bence György; Tamás G Szabó; Mária Pásztói; Zsuzsanna Pál; Petra Misják; Borbála Aradi; Valéria László; Eva Pállinger; Erna Pap; Agnes Kittel; György Nagy; András Falus; Edit I Buzás
Journal:  Cell Mol Life Sci       Date:  2011-05-11       Impact factor: 9.261

3.  The COMBREX project: design, methodology, and initial results.

Authors:  Brian P Anton; Yi-Chien Chang; Peter Brown; Han-Pil Choi; Lina L Faller; Jyotsna Guleria; Zhenjun Hu; Niels Klitgord; Ami Levy-Moonshine; Almaz Maksad; Varun Mazumdar; Mark McGettrick; Lais Osmani; Revonda Pokrzywa; John Rachlin; Rajeswari Swaminathan; Benjamin Allen; Genevieve Housman; Caitlin Monahan; Krista Rochussen; Kevin Tao; Ashok S Bhagwat; Steven E Brenner; Linda Columbus; Valérie de Crécy-Lagard; Donald Ferguson; Alexey Fomenkov; Giovanni Gadda; Richard D Morgan; Andrei L Osterman; Dmitry A Rodionov; Irina A Rodionova; Kenneth E Rudd; Dieter Söll; James Spain; Shuang-Yong Xu; Alex Bateman; Robert M Blumenthal; J Martin Bollinger; Woo-Suk Chang; Manuel Ferrer; Iddo Friedberg; Michael Y Galperin; Julien Gobeill; Daniel Haft; John Hunt; Peter Karp; William Klimke; Carsten Krebs; Dana Macelis; Ramana Madupu; Maria J Martin; Jeffrey H Miller; Claire O'Donovan; Bernhard Palsson; Patrick Ruch; Aaron Setterdahl; Granger Sutton; John Tate; Alexander Yakunin; Dmitri Tchigvintsev; Germán Plata; Jie Hu; Russell Greiner; David Horn; Kimmen Sjölander; Steven L Salzberg; Dennis Vitkup; Stanley Letovsky; Daniel Segrè; Charles DeLisi; Richard J Roberts; Martin Steffen; Simon Kasif
Journal:  PLoS Biol       Date:  2013-08-27       Impact factor: 8.029

4.  Transcriptome and long noncoding RNA sequencing of three extracellular vesicle subtypes released from the human colon cancer LIM1863 cell line.

Authors:  Maoshan Chen; Rong Xu; Hong Ji; David W Greening; Alin Rai; Keiichi Izumikawa; Hideaki Ishikawa; Nobuhiro Takahashi; Richard J Simpson
Journal:  Sci Rep       Date:  2016-12-05       Impact factor: 4.379

5.  MotViz: a tool for sequence motif prediction in parallel to structural visualization and analyses.

Authors:  Muhammad Sulaman Nawaz; Qurrat Ul Ain; Umair Seemab; Sajid Rashid
Journal:  Genomics Proteomics Bioinformatics       Date:  2012-02       Impact factor: 7.691

6.  Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex.

Authors:  Nadav Rappoport; Michal Linial
Journal:  BMC Bioinformatics       Date:  2013-02-28       Impact factor: 3.169

7.  Identification of odorant-receptor interactions by global mapping of the human odorome.

Authors:  Karine Audouze; Anne Tromelin; Anne Marie Le Bon; Christine Belloir; Rasmus Koefoed Petersen; Karsten Kristiansen; Søren Brunak; Olivier Taboureau
Journal:  PLoS One       Date:  2014-04-02       Impact factor: 3.240

8.  Finding sequences for over 270 orphan enzymes.

Authors:  Alexander G Shearer; Tomer Altman; Christine D Rhee
Journal:  PLoS One       Date:  2014-05-14       Impact factor: 3.240

  8 in total

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