Literature DB >> 21080267

Reduced spectral density mapping for proteins: Validity for studies of 13C relaxation.

R A Atkinson1, J F Lefèvre.   

Abstract

Spectral density mapping provides direct access to protein dynamics with no assumptions as to the nature of the molecule or its dynamic behaviour. Reduced spectral density mapping characterises a protein's motions at a lower experimental burden, assuming that the spectral density function J(ω) is flat around ωH. This introduces little error for 15N relaxation data but is less valid for 13C studies, perturbing J(ωC) considerably to an extent that depends on the nature of the molecule's motions. We propose the fitting of spectral density at high frequencies to a single Lorentzian and show that the true values of the spectral density lie between those determined by the two approximations.

Entities:  

Year:  1999        PMID: 21080267     DOI: 10.1023/A:1008323420405

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  12 in total

1.  Anisotropic molecular rotational diffusion in 15N spin relaxation studies of protein mobility.

Authors:  P Luginbühl; K V Pervushin; H Iwai; K Wüthrich
Journal:  Biochemistry       Date:  1997-06-17       Impact factor: 3.162

2.  Optimization by simulated annealing.

Authors:  S Kirkpatrick; C D Gelatt; M P Vecchi
Journal:  Science       Date:  1983-05-13       Impact factor: 47.728

3.  Backbone dynamics of calcium-loaded calbindin D9k studied by two-dimensional proton-detected 15N NMR spectroscopy.

Authors:  J Kördel; N J Skelton; M Akke; A G Palmer; W J Chazin
Journal:  Biochemistry       Date:  1992-05-26       Impact factor: 3.162

4.  Model-free approach beyond the borders of its applicability.

Authors:  D M Korzhnev; V Y Orekhov; A S Arseniev
Journal:  J Magn Reson       Date:  1997-08       Impact factor: 2.229

5.  Internal mobility in the partially folded DNA binding and dimerization domains of GAL4: NMR analysis of the N-H spectral density functions.

Authors:  J F Lefevre; K T Dayie; J W Peng; G Wagner
Journal:  Biochemistry       Date:  1996-02-27       Impact factor: 3.162

6.  Comparison of the backbone dynamics of a folded and an unfolded SH3 domain existing in equilibrium in aqueous buffer.

Authors:  N A Farrow; O Zhang; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1995-01-24       Impact factor: 3.162

7.  Frequency spectrum of NH bonds in eglin c from spectral density mapping at multiple fields.

Authors:  J W Peng; G Wagner
Journal:  Biochemistry       Date:  1995-12-26       Impact factor: 3.162

8.  Spectral density function mapping using 15N relaxation data exclusively.

Authors:  N A Farrow; O Zhang; A Szabo; D A Torchia; L E Kay
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

9.  Mapping of the spectral densities of N-H bond motions in eglin c using heteronuclear relaxation experiments.

Authors:  J W Peng; G Wagner
Journal:  Biochemistry       Date:  1992-09-15       Impact factor: 3.162

10.  Protein backbone dynamics revealed by quasi spectral density function analysis of amide N-15 nuclei.

Authors:  R Ishima; K Nagayama
Journal:  Biochemistry       Date:  1995-03-14       Impact factor: 3.162

View more
  2 in total

1.  Structure, dynamics, and selectivity of the sodium channel blocker mu-conotoxin SIIIA.

Authors:  Shenggen Yao; Min-Min Zhang; Doju Yoshikami; Layla Azam; Baldomero M Olivera; Grzegorz Bulaj; Raymond S Norton
Journal:  Biochemistry       Date:  2008-09-18       Impact factor: 3.162

2.  Characterization of intrinsically disordered prostate associated gene (PAGE5) at single residue resolution by NMR spectroscopy.

Authors:  Maarit Hellman; Helena Tossavainen; Pekka Rappu; Jyrki Heino; Perttu Permi
Journal:  PLoS One       Date:  2011-11-02       Impact factor: 3.240

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.