Literature DB >> 21075745

Protein Peeling 3D: new tools for analyzing protein structures.

Jean-Christophe Gelly1, Alexandre G de Brevern.   

Abstract

UNLABELLED: We present an improved version of our Protein Peeling web server dedicated to the analysis of protein structure architecture through the identification of protein units produced by an iterative splitting algorithm. New features include identification of structural domains, detection of unstructured terminal elements and evaluation of the stability of protein unit structures. AVAILABILITY: The website is free and open to all users with no login requirements at http://www.dsimb.inserm.fr/dsimb-tools/peeling3.

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Year:  2010        PMID： 21075745     DOI： 10.1093/bioinformatics/btq610

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  8 in total

1.  Selective constraint on human pre-mRNA splicing by protein structural properties.

Authors:  Jean-Christophe Gelly; Hsuan-Yu Lin; Alexandre G de Brevern; Trees-Juen Chuang; Feng-Chi Chen
Journal:  Genome Biol Evol       Date:  2012-08-30       Impact factor: 3.416

2.  An ambiguity principle for assigning protein structural domains.

Authors:  Guillaume Postic; Yassine Ghouzam; Romain Chebrek; Jean-Christophe Gelly
Journal:  Sci Adv       Date:  2017-01-13       Impact factor: 14.136

3.  In silico analysis of Glanzmann variants of Calf-1 domain of αIIbβ3 integrin revealed dynamic allosteric effect.

Authors:  Matthieu Goguet; Tarun Jairaj Narwani; Rachel Petermann; Vincent Jallu; Alexandre G de Brevern
Journal:  Sci Rep       Date:  2017-08-14       Impact factor: 4.379

4.  SWORD2: hierarchical analysis of protein 3D structures.

Authors:  Gabriel Cretin; Tatiana Galochkina; Yann Vander Meersche; Alexandre G de Brevern; Guillaume Postic; Jean-Christophe Gelly
Journal:  Nucleic Acids Res       Date:  2022-05-17       Impact factor: 19.160

5.  Assignment of structural domains in proteins using diffusion kernels on graphs.

Authors:  Mohammad Taheri-Ledari; Amirali Zandieh; Seyed Peyman Shariatpanahi; Changiz Eslahchi
Journal:  BMC Bioinformatics       Date:  2022-09-08       Impact factor: 3.307

6.  VLDP web server: a powerful geometric tool for analysing protein structures in their environment.

Authors:  Jérémy Esque; Sylvain Léonard; Alexandre G de Brevern; Christophe Oguey
Journal:  Nucleic Acids Res       Date:  2013-06-12       Impact factor: 16.971

7.  Towards conformational fidelity of a quaternary HIV-1 epitope: computational design and directed evolution of a minimal V1V2 antigen.

Authors:  Jennifer I Lai; Deeptak Verma; Chris Bailey-Kellogg; Margaret E Ackerman
Journal:  Protein Eng Des Sel       Date:  2018-04-01       Impact factor: 1.650

8.  Analysis of Integrin αIIb Subunit Dynamics Reveals Long-Range Effects of Missense Mutations on Calf Domains.

Authors:  Sali Anies; Vincent Jallu; Julien Diharce; Tarun J Narwani; Alexandre G de Brevern
Journal:  Int J Mol Sci       Date:  2022-01-13       Impact factor: 5.923
  8 in total

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