Literature DB >> 21070940

Raman-assisted crystallography suggests a mechanism of X-ray-induced disulfide radical formation and reparation.

Philippe Carpentier1, Antoine Royant, Martin Weik, Dominique Bourgeois.   

Abstract

X-ray-induced chemistry modifies biological macromolecules structurally and functionally, even at cryotemperatures. The mechanisms of x-radiation damage in colored or redox proteins have often been investigated by combining X-ray crystallography with in crystallo-ultraviolet-visible spectroscopy. Here, we used Raman microspectrophotometry to follow the onset of damage in crystalline lysozyme, notably that of disulfide bond breakage. The dose-dependent Raman spectra are consistent with a kinetic model for the rupture of disulfide bonds suggesting the rapid build up of an anionic radical intermediate. This intermediate may either revert back to the oxidized state or evolve toward protonated radical species or cleaved products. The data strongly suggest that back conversion of the anionic radical is significantly accelerated by X-rays, revealing an X-ray-induced "repair" mechanism. The possibility of X-ray-induced chemical repair is an important feature to take into account when assessing radiation damage in macromolecules.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 21070940     DOI: 10.1016/j.str.2010.09.010

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  13 in total

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4.  Direct evidence for a peroxide intermediate and a reactive enzyme-substrate-dioxygen configuration in a cofactor-free oxidase.

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5.  A new on-axis micro-spectrophotometer for combining Raman, fluorescence and UV/Vis absorption spectroscopy with macromolecular crystallography at the Swiss Light Source.

Authors:  Guillaume Pompidor; Florian S N Dworkowski; Vincent Thominet; Clemens Schulze-Briese; Martin R Fuchs
Journal:  J Synchrotron Radiat       Date:  2013-07-05       Impact factor: 2.616

6.  Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies.

Authors:  Kristin A Sutton; Paul J Black; Kermit R Mercer; Elspeth F Garman; Robin L Owen; Edward H Snell; William A Bernhard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-11-19

7.  Challenges and solutions for the analysis of in situ, in crystallo micro-spectrophotometric data.

Authors:  Florian S N Dworkowski; Michael A Hough; Guillaume Pompidor; Martin R Fuchs
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-01

8.  In crystallo optical spectroscopy (icOS) as a complementary tool on the macromolecular crystallography beamlines of the ESRF.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-01

9.  Radiation-damage-induced phasing: a case study using UV irradiation with light-emitting diodes.

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10.  Raman spectroscopy adds complementary detail to the high-resolution x-ray crystal structure of photosynthetic PsbP from Spinacia oleracea.

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Journal:  PLoS One       Date:  2012-10-05       Impact factor: 3.240

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