Literature DB >> 21068275

Call for a quality standard for sequence-based assays in clinical microbiology: necessity for quality assessment of sequences used in microbial identification and typing.

Anthony Underwood1, Jonathan Green.   

Abstract

Mesh：

Year:  2010        PMID： 21068275      PMCID： PMC3020486          DOI： 10.1128/JCM.01918-10

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


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  30 in total

1.  ICB database: the gyrB database for identification and classification of bacteria.

Authors:  K Watanabe; J Nelson; S Harayama; H Kasai
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

Review 2.  The public health significance of HIV-1 subtypes.

Authors:  I D Tatt; K L Barlow; A Nicoll; J P Clewley
Journal:  AIDS       Date:  2001       Impact factor: 4.177

3.  RIDOM: Ribosomal Differentiation of Medical Micro-organisms Database.

Authors:  Dag Harmsen; Jörg Rothgänger; Matthias Frosch; Jürgen Albert
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

Review 4.  Pyrosequencing for microbial typing.

Authors:  Mostafa Ronaghi; Elahe Elahi
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2002-12-25       Impact factor: 3.205

5.  Pyrosequencing for SNP genotyping.

Authors:  Mostafa Ronaghi
Journal:  Methods Mol Biol       Date:  2003

6.  Sequence-based typing of Legionella pneumophila serogroup 1 offers the potential for true portability in legionellosis outbreak investigation.

Authors:  Valeria Gaia; Norman K Fry; Timothy G Harrison; Raffaele Peduzzi
Journal:  J Clin Microbiol       Date:  2003-07       Impact factor: 5.948

Review 7.  Rapid detection of resistance in Mycobacterium tuberculosis: a review discussing molecular approaches.

Authors:  D García de Viedma
Journal:  Clin Microbiol Infect       Date:  2003-05       Impact factor: 8.067

Review 8.  Model-based quality assessment and base-calling for second-generation sequencing data.

Authors:  Héctor Corrada Bravo; Rafael A Irizarry
Journal:  Biometrics       Date:  2010-09       Impact factor: 2.571

9.  Human immunodeficiency virus reverse transcriptase and protease sequence database.

Authors:  Soo-Yon Rhee; Matthew J Gonzales; Rami Kantor; Bradley J Betts; Jaideep Ravela; Robert W Shafer
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

10.  Evaluation of RIDOM, MicroSeq, and Genbank services in the molecular identification of Nocardia species.

Authors:  Alexander Mellmann; Joann L Cloud; Sebastian Andrees; Kym Blackwood; Karen C Carroll; Amin Kabani; Andreas Roth; Dag Harmsen
Journal:  Int J Med Microbiol       Date:  2003-11       Impact factor: 3.473
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  5 in total

1.  Identification and Analysis of Informative Single Nucleotide Polymorphisms in 16S rRNA Gene Sequences of the Bacillus cereus Group.

Authors:  Janetta R Hakovirta; Samantha Prezioso; David Hodge; Segaran P Pillai; Linda M Weigel
Journal:  J Clin Microbiol       Date:  2016-08-31       Impact factor: 5.948

2.  Significance of molecular identification and antifungal susceptibility of clinically significant yeasts and moulds in a global antifungal surveillance programme.

Authors:  Michael A Pfaller; Leah N Woosley; Shawn A Messer; Ronald N Jones; Mariana Castanheira
Journal:  Mycopathologia       Date:  2012-05-13       Impact factor: 2.574

Review 3.  Routine use of microbial whole genome sequencing in diagnostic and public health microbiology.

Authors:  Claudio U Köser; Matthew J Ellington; Edward J P Cartwright; Stephen H Gillespie; Nicholas M Brown; Mark Farrington; Matthew T G Holden; Gordon Dougan; Stephen D Bentley; Julian Parkhill; Sharon J Peacock
Journal:  PLoS Pathog       Date:  2012-08-02       Impact factor: 6.823

4.  Sequence verification of synthetic DNA by assembly of sequencing reads.

Authors:  Mandy L Wilson; Yizhi Cai; Regina Hanlon; Samantha Taylor; Bastien Chevreux; João C Setubal; Brett M Tyler; Jean Peccoud
Journal:  Nucleic Acids Res       Date:  2012-10-04       Impact factor: 16.971

Review 5.  Disseminated cysticercosis: clinical spectrum, Toll-like receptor-4 gene polymorphisms and role of albendazole: A prospective follow-up of 60 cases with a review of 56 published cases.

Authors:  Abdul Qavi; Ravindra Kumar Garg; Hardeep Singh Malhotra; Amita Jain; Neeraj Kumar; Kiran Preet Malhotra; Pradeep Kumar Srivastava; Rajesh Verma; Praveen Kumar Sharma
Journal:  Medicine (Baltimore)       Date:  2016-09       Impact factor: 1.889
  5 in total

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