Literature DB >> 21063946

Data standardization by the HUPO-PSI: how has the community benefitted?

Sandra Orchard1, Henning Hermjakob.   

Abstract

The groundwork allowing the systematic capture of proteomics data has now largely been completed, with the design and publication of exchange formats and interchange standards by the Human Proteome Organisation Proteomics Standards Initiative (HUPO-PSI). Our focus can now shift to gathering the ever-increasing amounts of generated data, and finding novel ways to catalog and present it so that a deeper understanding of basic science, health, and disease can be gained by scientists mining these increasingly rich resources.

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Year:  2011        PMID: 21063946     DOI: 10.1007/978-1-60761-987-1_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  4 in total

1.  Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results.

Authors:  Salvador Martínez-Bartolomé; Tom Casimir Bamberger; Mathieu Lavallée-Adam; Daniel B McClatchy; John R Yates
Journal:  J Proteome Res       Date:  2019-07-01       Impact factor: 4.466

2.  The Units Ontology: a tool for integrating units of measurement in science.

Authors:  Georgios V Gkoutos; Paul N Schofield; Robert Hoehndorf
Journal:  Database (Oxford)       Date:  2012-10-10       Impact factor: 3.451

3.  Ten years of standardizing proteomic data: a report on the HUPO-PSI Spring Workshop: April 12-14th, 2012, San Diego, USA.

Authors:  Sandra Orchard; Pierre-Alain Binz; Christoph Borchers; Michael K Gilson; Andrew R Jones; George Nicola; Juan Antonio Vizcaino; Eric W Deutsch; Henning Hermjakob
Journal:  Proteomics       Date:  2012-09       Impact factor: 3.984

4.  PaxDb, a database of protein abundance averages across all three domains of life.

Authors:  M Wang; M Weiss; M Simonovic; G Haertinger; S P Schrimpf; M O Hengartner; C von Mering
Journal:  Mol Cell Proteomics       Date:  2012-04-24       Impact factor: 5.911

  4 in total

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