Literature DB >> 21063067

FISH mapping in cattle (Bos taurus L.) is not yet out of fashion.

L De Lorenzi1, L Molteni, P Parma.   

Abstract

Physical mapping of genes by fluorescence in situ hybridization (FISH) seems to be out of fashion in species whose assembled genome sequences are available. However, in this work we evidence the existence of errors in gene location in the Btau_4.0 assembly. We show that DFNA5 and CHCHD6 genes are located on BTA4 and BTA22, respectively, instead of BTA10 and BTA3, as displayed by Btau_4.0. This report emphasizes the need to verify the data on physical localization of genes in the cattle genome (at least by taking into account comparative data reported in available papers) and the need to improve the cattle genome assembly. Our results indicate that FISH mapping in cattle is still useful.

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Year:  2010        PMID： 21063067     DOI： 10.1007/BF03208879

Source DB:  PubMed          Journal:  J Appl Genet        ISSN： 1234-1983            Impact factor:   2.653


  7 in total

1.  International System for Chromosome Nomenclature of Domestic Bovids (ISCNDB 2000).

Authors:  E P Cribiu; D Di Berardino; G P Di Meo; A Eggen; D S Gallagher; I Gustavsson; H Hayes; L Iannuzzi; C P Popescu; J Rubes; S Schmutz; G Stranzinger; A Vaiman; J Womack
Journal:  Cytogenet Cell Genet       Date:  2001

2.  A new case of rob(14;17) in cattle.

Authors:  L De Lorenzi; L Molteni; A De Giovanni; P Parma
Journal:  Cytogenet Genome Res       Date:  2008-04-30       Impact factor: 1.636

3.  Development and assignment of bovine-specific PCR systems for the Texas nomenclature marker genes and isolation of homologous BAC probes.

Authors:  M Gautier; P Laurent; H Hayes; A Eggen
Journal:  Genet Sel Evol       Date:  2001 Mar-Apr       Impact factor: 4.297

4.  A 1463 gene cattle-human comparative map with anchor points defined by human genome sequence coordinates.

Authors:  Annelie Everts-van der Wind; Srinivas R Kata; Mark R Band; Mark Rebeiz; Denis M Larkin; Robin E Everts; Cheryl A Green; Lei Liu; Shreedhar Natarajan; Tom Goldammer; Jun Heon Lee; Stephanie McKay; James E Womack; Harris A Lewin
Journal:  Genome Res       Date:  2004-07       Impact factor: 9.043

5.  High-resolution comparative mapping among man, cattle and mouse suggests a role for repeat sequences in mammalian genome evolution.

Authors:  Laurent Schibler; Anne Roig; Marie-Françoise Mahe; Pascal Laurent; Hélène Hayes; François Rodolphe; Edmond P Cribiu
Journal:  BMC Genomics       Date:  2006-08-01       Impact factor: 3.969

6.  The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:  Christine G Elsik; Ross L Tellam; Kim C Worley; Richard A Gibbs; Donna M Muzny; George M Weinstock; David L Adelson; Evan E Eichler; Laura Elnitski; Roderic Guigó; Debora L Hamernik; Steve M Kappes; Harris A Lewin; David J Lynn; Frank W Nicholas; Alexandre Reymond; Monique Rijnkels; Loren C Skow; Evgeny M Zdobnov; Lawrence Schook; James Womack; Tyler Alioto; Stylianos E Antonarakis; Alex Astashyn; Charles E Chapple; Hsiu-Chuan Chen; Jacqueline Chrast; Francisco Câmara; Olga Ermolaeva; Charlotte N Henrichsen; Wratko Hlavina; Yuri Kapustin; Boris Kiryutin; Paul Kitts; Felix Kokocinski; Melissa Landrum; Donna Maglott; Kim Pruitt; Victor Sapojnikov; Stephen M Searle; Victor Solovyev; Alexandre Souvorov; Catherine Ucla; Carine Wyss; Juan M Anzola; Daniel Gerlach; Eran Elhaik; Dan Graur; Justin T Reese; Robert C Edgar; John C McEwan; Gemma M Payne; Joy M Raison; Thomas Junier; Evgenia V Kriventseva; Eduardo Eyras; Mireya Plass; Ravikiran Donthu; Denis M Larkin; James Reecy; Mary Q Yang; Lin Chen; Ze Cheng; Carol G Chitko-McKown; George E Liu; Lakshmi K Matukumalli; Jiuzhou Song; Bin Zhu; Daniel G Bradley; Fiona S L Brinkman; Lilian P L Lau; Matthew D Whiteside; Angela Walker; Thomas T Wheeler; Theresa Casey; J Bruce German; Danielle G Lemay; Nauman J Maqbool; Adrian J Molenaar; Seongwon Seo; Paul Stothard; Cynthia L Baldwin; Rebecca Baxter; Candice L Brinkmeyer-Langford; Wendy C Brown; Christopher P Childers; Timothy Connelley; Shirley A Ellis; Krista Fritz; Elizabeth J Glass; Carolyn T A Herzig; Antti Iivanainen; Kevin K Lahmers; Anna K Bennett; C Michael Dickens; James G R Gilbert; Darren E Hagen; Hanni Salih; Jan Aerts; Alexandre R Caetano; Brian Dalrymple; Jose Fernando Garcia; Clare A Gill; Stefan G Hiendleder; Erdogan Memili; Diane Spurlock; John L Williams; Lee Alexander; Michael J Brownstein; Leluo Guan; Robert A Holt; Steven J M Jones; Marco A Marra; Richard Moore; Stephen S Moore; Andy Roberts; Masaaki Taniguchi; Richard C Waterman; Joseph Chacko; Mimi M Chandrabose; Andy Cree; Marvin Diep Dao; Huyen H Dinh; Ramatu Ayiesha Gabisi; Sandra Hines; Jennifer Hume; Shalini N Jhangiani; Vandita Joshi; Christie L Kovar; Lora R Lewis; Yih-Shin Liu; John Lopez; Margaret B Morgan; Ngoc Bich Nguyen; Geoffrey O Okwuonu; San Juana Ruiz; Jireh Santibanez; Rita A Wright; Christian Buhay; Yan Ding; Shannon Dugan-Rocha; Judith Herdandez; Michael Holder; Aniko Sabo; Amy Egan; Jason Goodell; Katarzyna Wilczek-Boney; Gerald R Fowler; Matthew Edward Hitchens; Ryan J Lozado; Charles Moen; David Steffen; James T Warren; Jingkun Zhang; Readman Chiu; Jacqueline E Schein; K James Durbin; Paul Havlak; Huaiyang Jiang; Yue Liu; Xiang Qin; Yanru Ren; Yufeng Shen; Henry Song; Stephanie Nicole Bell; Clay Davis; Angela Jolivet Johnson; Sandra Lee; Lynne V Nazareth; Bella Mayurkumar Patel; Ling-Ling Pu; Selina Vattathil; Rex Lee Williams; Stacey Curry; Cerissa Hamilton; Erica Sodergren; David A Wheeler; Wes Barris; Gary L Bennett; André Eggen; Ronnie D Green; Gregory P Harhay; Matthew Hobbs; Oliver Jann; John W Keele; Matthew P Kent; Sigbjørn Lien; Stephanie D McKay; Sean McWilliam; Abhirami Ratnakumar; Robert D Schnabel; Timothy Smith; Warren M Snelling; Tad S Sonstegard; Roger T Stone; Yoshikazu Sugimoto; Akiko Takasuga; Jeremy F Taylor; Curtis P Van Tassell; Michael D Macneil; Antonio R R Abatepaulo; Colette A Abbey; Virpi Ahola; Iassudara G Almeida; Ariel F Amadio; Elen Anatriello; Suria M Bahadue; Fernando H Biase; Clayton R Boldt; Jeffery A Carroll; Wanessa A Carvalho; Eliane P Cervelatti; Elsa Chacko; Jennifer E Chapin; Ye Cheng; Jungwoo Choi; Adam J Colley; Tatiana A de Campos; Marcos De Donato; Isabel K F de Miranda Santos; Carlo J F de Oliveira; Heather Deobald; Eve Devinoy; Kaitlin E Donohue; Peter Dovc; Annett Eberlein; Carolyn J Fitzsimmons; Alessandra M Franzin; Gustavo R Garcia; Sem Genini; Cody J Gladney; Jason R Grant; Marion L Greaser; Jonathan A Green; Darryl L Hadsell; Hatam A Hakimov; Rob Halgren; Jennifer L Harrow; Elizabeth A Hart; Nicola Hastings; Marta Hernandez; Zhi-Liang Hu; Aaron Ingham; Terhi Iso-Touru; Catherine Jamis; Kirsty Jensen; Dimos Kapetis; Tovah Kerr; Sari S Khalil; Hasan Khatib; Davood Kolbehdari; Charu G Kumar; Dinesh Kumar; Richard Leach; Justin C-M Lee; Changxi Li; Krystin M Logan; Roberto Malinverni; Elisa Marques; William F Martin; Natalia F Martins; Sandra R Maruyama; Raffaele Mazza; Kim L McLean; Juan F Medrano; Barbara T Moreno; Daniela D Moré; Carl T Muntean; Hari P Nandakumar; Marcelo F G Nogueira; Ingrid Olsaker; Sameer D Pant; Francesca Panzitta; Rosemeire C P Pastor; Mario A Poli; Nathan Poslusny; Satyanarayana Rachagani; Shoba Ranganathan; Andrej Razpet; Penny K Riggs; Gonzalo Rincon; Nelida Rodriguez-Osorio; Sandra L Rodriguez-Zas; Natasha E Romero; Anne Rosenwald; Lillian Sando; Sheila M Schmutz; Libing Shen; Laura Sherman; Bruce R Southey; Ylva Strandberg Lutzow; Jonathan V Sweedler; Imke Tammen; Bhanu Prakash V L Telugu; Jennifer M Urbanski; Yuri T Utsunomiya; Chris P Verschoor; Ashley J Waardenberg; Zhiquan Wang; Robert Ward; Rosemarie Weikard; Thomas H Welsh; Stephen N White; Laurens G Wilming; Kris R Wunderlich; Jianqi Yang; Feng-Qi Zhao
Journal:  Science       Date:  2009-04-24       Impact factor: 47.728

7.  A physical map of the bovine genome.

Authors:  Warren M Snelling; Readman Chiu; Jacqueline E Schein; Matthew Hobbs; Colette A Abbey; David L Adelson; Jan Aerts; Gary L Bennett; Ian E Bosdet; Mekki Boussaha; Rudiger Brauning; Alexandre R Caetano; Marcos M Costa; Allan M Crawford; Brian P Dalrymple; André Eggen; Annelie Everts-van der Wind; Sandrine Floriot; Mathieu Gautier; Clare A Gill; Ronnie D Green; Robert Holt; Oliver Jann; Steven Jm Jones; Steven M Kappes; John W Keele; Pieter J de Jong; Denis M Larkin; Harris A Lewin; John C McEwan; Stephanie McKay; Marco A Marra; Carrie A Mathewson; Lakshmi K Matukumalli; Stephen S Moore; Brenda Murdoch; Frank W Nicholas; Kazutoyo Osoegawa; Alice Roy; Hanni Salih; Laurent Schibler; Robert D Schnabel; Licia Silveri; Loren C Skow; Timothy Pl Smith; Tad S Sonstegard; Jeremy F Taylor; Ross Tellam; Curtis P Van Tassell; John L Williams; James E Womack; Natasja H Wye; George Yang; Shaying Zhao
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583
  7 in total
  3 in total

1.  Comparative FISH mapping of BMPR1B, BMP15 and GDF9 fecundity genes on cattle, river buffalo, sheep and goat chromosomes.

Authors:  A Farhadi; V Genualdo; A Perucatti; S H Hafezian; G Rahimi-Mianji; L De Lorenzi; P Parma; L Iannuzzi; A Iannuzzi
Journal:  J Genet       Date:  2013-12       Impact factor: 1.166

2.  Fluorescence in situ hybridization mapping of six loci containing genes involved in the dioxin metabolism of domestic bovids.

Authors:  Viviana Genualdo; Veronica Spalenza; Angela Perucatti; Alessandra Iannuzzi; Giulia Pia Di Meo; Annamaria Caputi-Jambrenghi; Gino Vonghia; Roberto Rasero; Carlo Nebbia; Paola Sacchi; Leopoldo Iannuzzi
Journal:  J Appl Genet       Date:  2011-04-05       Impact factor: 3.240

3.  Fluorescence in situ hybridization-based karyotyping of soybean translocation lines.

Authors:  Seth D Findley; Allison L Pappas; Yaya Cui; James A Birchler; Reid G Palmer; Gary Stacey
Journal:  G3 (Bethesda)       Date:  2011-07-01       Impact factor: 3.154
  3 in total

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