Literature DB >> 21062058

Atomistic evidence of how force dynamically regulates thiol/disulfide exchange.

Wenjin Li1, Frauke Gräter.   

Abstract

The intricate coupling of mechanical force and chemical reactivity has been increasingly revealed in recent years by force spectroscopy experiments on the thiol/disulfide exchange reaction. We here aimed at elucidating the underlying dynamic effects of force on the reaction center for the case of disulfide bond reduction by dithiothreitol at forces of 200-2000 pN, by combining transition path sampling and quantum/classical mechanical simulations. Reaction rates and their dependence on force as quantified by Δx(r), the distance between reactant and transition state, are in good agreement with experiments but indicate a shift of the transition state structure at high forces. Indeed, while an associate S(N)2 mechanism prevails, force causes a move of the transition state to a longer length of the cleaving bond and a shorter length of the forming disulfide bond. Our results highlight the distribution of force into various degrees of freedom, which implies that care must be taken when correlating Δx(r) with a single order parameter of the reaction.

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Year:  2010        PMID: 21062058     DOI: 10.1021/ja104763q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  18 in total

1.  Mechanical force can fine-tune redox potentials of disulfide bonds.

Authors:  Ilona B Baldus; Frauke Gräter
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

2.  Reducing the cost of evaluating the committor by a fitting procedure.

Authors:  Wenjin Li; Ao Ma
Journal:  J Chem Phys       Date:  2015-11-07       Impact factor: 3.488

3.  Some studies on generalized coordinate sets for polyatomic molecules.

Authors:  Wenjin Li; Ao Ma
Journal:  J Chem Phys       Date:  2015-12-14       Impact factor: 3.488

4.  The Janus-faced role of external forces in mechanochemical disulfide bond cleavage.

Authors:  Przemyslaw Dopieralski; Jordi Ribas-Arino; Padmesh Anjukandi; Martin Krupicka; Janos Kiss; Dominik Marx
Journal:  Nat Chem       Date:  2013-06-16       Impact factor: 24.427

5.  A benchmark for reaction coordinates in the transition path ensemble.

Authors:  Wenjin Li; Ao Ma
Journal:  J Chem Phys       Date:  2016-04-07       Impact factor: 3.488

6.  Reaction mechanism and reaction coordinates from the viewpoint of energy flow.

Authors:  Wenjin Li; Ao Ma
Journal:  J Chem Phys       Date:  2016-03-21       Impact factor: 3.488

7.  Sterically controlled mechanochemistry under hydrostatic pressure.

Authors:  Hao Yan; Fan Yang; Ding Pan; Yu Lin; J Nathan Hohman; Diego Solis-Ibarra; Fei Hua Li; Jeremy E P Dahl; Robert M K Carlson; Boryslav A Tkachenko; Andrey A Fokin; Peter R Schreiner; Giulia Galli; Wendy L Mao; Zhi-Xun Shen; Nicholas A Melosh
Journal:  Nature       Date:  2018-02-21       Impact factor: 49.962

Review 8.  Allosteric disulfides: Sophisticated molecular structures enabling flexible protein regulation.

Authors:  Joyce Chiu; Philip J Hogg
Journal:  J Biol Chem       Date:  2019-01-10       Impact factor: 5.157

9.  Identification of allosteric disulfides from prestress analysis.

Authors:  Beifei Zhou; Ilona B Baldus; Wenjin Li; Scott A Edwards; Frauke Gräter
Journal:  Biophys J       Date:  2014-08-05       Impact factor: 4.033

Review 10.  Kinetics and mechanisms of thiol-disulfide exchange covering direct substitution and thiol oxidation-mediated pathways.

Authors:  Péter Nagy
Journal:  Antioxid Redox Signal       Date:  2013-01-09       Impact factor: 8.401

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