Literature DB >> 21059407

HaploSearch: a tool for haplotype-sequence two-way transformation.

Rosa Fregel1, Sergio Delgado.   

Abstract

Comparison of available mitochondrial DNA data is some times hindered by the data presentation format. HaploSearch is a simple tool for transforming DNA sequences into haplotype data and vice versa, speeding up the manipulation of large datasets. Although designed for mitochondrial DNA, HaploSearch could be used with any kind of DNA type. HaploSearch program, detailed software instructions and example files are freely available on the web http://www.haplosite.com/haplosearch/.
Copyright © 2010 Elsevier B.V. and Mitochondria Research Society. All rights reserved.

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Year:  2010        PMID： 21059407     DOI： 10.1016/j.mito.2010.11.001

Source DB:  PubMed          Journal:  Mitochondrion        ISSN： 1567-7249            Impact factor:   4.160


  11 in total

1.  Complete mitogenome data for the Serbian population: the contribution to high-quality forensic databases.

Authors:  Slobodan Davidovic; Boris Malyarchuk; Tomasz Grzybowski; Jelena M Aleksic; Miroslava Derenko; Andrey Litvinov; Urszula Rogalla-Ładniak; Milena Stevanovic; Natasa Kovacevic-Grujicic
Journal:  Int J Legal Med       Date:  2020-06-06       Impact factor: 2.686

2.  Carriers of Mitochondrial DNA Macrohaplogroup N Lineages Reached Australia around 50,000 Years Ago following a Northern Asian Route.

Authors:  Rosa Fregel; Vicente Cabrera; Jose M Larruga; Khaled K Abu-Amero; Ana M González
Journal:  PLoS One       Date:  2015-06-08       Impact factor: 3.240

3.  Ancient DNA analysis of 8000 B.C. near eastern farmers supports an early neolithic pioneer maritime colonization of Mainland Europe through Cyprus and the Aegean Islands.

Authors:  Eva Fernández; Alejandro Pérez-Pérez; Cristina Gamba; Eva Prats; Pedro Cuesta; Josep Anfruns; Miquel Molist; Eduardo Arroyo-Pardo; Daniel Turbón
Journal:  PLoS Genet       Date:  2014-06-05       Impact factor: 5.917

4.  Carriers of human mitochondrial DNA macrohaplogroup M colonized India from southeastern Asia.

Authors:  Patricia Marrero; Khaled K Abu-Amero; Jose M Larruga; Vicente M Cabrera
Journal:  BMC Evol Biol       Date:  2016-11-10       Impact factor: 3.260

5.  Carriers of mitochondrial DNA macrohaplogroup R colonized Eurasia and Australasia from a southeast Asia core area.

Authors:  Jose M Larruga; Patricia Marrero; Khaled K Abu-Amero; Maria V Golubenko; Vicente M Cabrera
Journal:  BMC Evol Biol       Date:  2017-05-23       Impact factor: 3.260

6.  Carriers of mitochondrial DNA macrohaplogroup L3 basal lineages migrated back to Africa from Asia around 70,000 years ago.

Authors:  Vicente M Cabrera; Patricia Marrero; Khaled K Abu-Amero; Jose M Larruga
Journal:  BMC Evol Biol       Date:  2018-06-19       Impact factor: 3.260

7.  Late Pleistocene human genome suggests a local origin for the first farmers of central Anatolia.

Authors:  Michal Feldman; Eva Fernández-Domínguez; Luke Reynolds; Douglas Baird; Jessica Pearson; Israel Hershkovitz; Hila May; Nigel Goring-Morris; Marion Benz; Julia Gresky; Raffaela A Bianco; Andrew Fairbairn; Gökhan Mustafaoğlu; Philipp W Stockhammer; Cosimo Posth; Wolfgang Haak; Choongwon Jeong; Johannes Krause
Journal:  Nat Commun       Date:  2019-03-19       Impact factor: 14.919

8.  Mitogenomes illuminate the origin and migration patterns of the indigenous people of the Canary Islands.

Authors:  Rosa Fregel; Alejandra C Ordóñez; Jonathan Santana-Cabrera; Vicente M Cabrera; Javier Velasco-Vázquez; Verónica Alberto; Marco A Moreno-Benítez; Teresa Delgado-Darias; Amelia Rodríguez-Rodríguez; Juan C Hernández; Jorge Pais; Rafaela González-Montelongo; José M Lorenzo-Salazar; Carlos Flores; M Carmen Cruz-de-Mercadal; Nuria Álvarez-Rodríguez; Beth Shapiro; Matilde Arnay; Carlos D Bustamante
Journal:  PLoS One       Date:  2019-03-20       Impact factor: 3.240

9.  HLA-DRB1*14 is a protective allele for multiple sclerosis in an admixed Colombian population.

Authors:  Jaime Toro; David Cuellar-Giraldo; Camilo Díaz-Cruz; Lisseth-Estefania Burbano; Claudia-Marcela Guío; Saúl Reyes; Fabián Cortes; Simón Cárdenas-Robledo; Diana M Narváez; Wilmer Cárdenas; Alexandra Porras; María-Claudia Lattig; Helena Groot de Restrepo
Journal:  Neurol Neuroimmunol Neuroinflamm       Date:  2015-12-24

10.  AmtDB: a database of ancient human mitochondrial genomes.

Authors:  Edvard Ehler; Jirí Novotný; Anna Juras; Maciej Chylenski; Ondrej Moravcík; Jan Paces
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971
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