Literature DB >> 21045549

Features, processing states, and heterologous protein interactions in the modulation of the retroviral nucleocapsid protein function.

Gilles Mirambeau1, Sébastien Lyonnais, Robert J Gorelick.   

Abstract

Retroviral nucleocapsid (NC) is central to viral replication. Nucleic acid chaperoning is a key function for NC through the action of its conserved basic amino acids and zinc-finger structures. NC manipulates genomic RNA from its packaging in the producer cell to reverse transcription into the infected host cell. This chaperone function, in conjunction with NC's aggregating properties, is up-modulated by successive NC processing events, from the Gag precursor to the fully mature protein, resulting in the condensation of the nucleocapsid within the capsid shell. Reverse transcription also depends on NC processing, whereas this process provokes NC dissociation from double-stranded DNA, leading to a preintegration complex (PIC), competent for host chromosomal integration. In addition NC interacts with cellular proteins, some of which are involved in viral budding, and also with several viral proteins. All of these properties are reviewed here, focusing on HIV-1 as a paradigmatic reference and highlighting the plasticity of the nucleocapsid architecture.

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Year:  2010        PMID: 21045549      PMCID: PMC3073331          DOI: 10.4161/rna.7.6.13777

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  124 in total

1.  NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition.

Authors:  G K Amarasinghe; R N De Guzman; R B Turner; K J Chancellor; Z R Wu; M F Summers
Journal:  J Mol Biol       Date:  2000-08-11       Impact factor: 5.469

Review 2.  RNA chaperones, RNA annealers and RNA helicases.

Authors:  Lukas Rajkowitsch; Doris Chen; Sabine Stampfl; Katharina Semrad; Christina Waldsich; Oliver Mayer; Michael F Jantsch; Robert Konrat; Udo Bläsi; Renée Schroeder
Journal:  RNA Biol       Date:  2007-11       Impact factor: 4.652

Review 3.  Nucleocapsid protein function in early infection processes.

Authors:  James A Thomas; Robert J Gorelick
Journal:  Virus Res       Date:  2008-02-14       Impact factor: 3.303

Review 4.  The structural biology of HIV assembly.

Authors:  Barbie K Ganser-Pornillos; Mark Yeager; Wesley I Sundquist
Journal:  Curr Opin Struct Biol       Date:  2008-04-09       Impact factor: 6.809

Review 5.  HIV-1 accessory proteins--ensuring viral survival in a hostile environment.

Authors:  Michael H Malim; Michael Emerman
Journal:  Cell Host Microbe       Date:  2008-06-12       Impact factor: 21.023

6.  Human immunodeficiency virus type 1 Vif protein is an integral component of an mRNP complex of viral RNA and could be involved in the viral RNA folding and packaging process.

Authors:  H Zhang; R J Pomerantz; G Dornadula; Y Sun
Journal:  J Virol       Date:  2000-09       Impact factor: 5.103

7.  Mutations in human immunodeficiency virus type 1 nucleocapsid protein zinc fingers cause premature reverse transcription.

Authors:  James A Thomas; William J Bosche; Teresa L Shatzer; Donald G Johnson; Robert J Gorelick
Journal:  J Virol       Date:  2008-07-30       Impact factor: 5.103

8.  Mapping of nucleocapsid residues important for HIV-1 genomic RNA dimerization and packaging.

Authors:  Jafar Kafaie; Rujun Song; Levon Abrahamyan; Andrew J Mouland; Michael Laughrea
Journal:  Virology       Date:  2008-03-17       Impact factor: 3.616

9.  Human immunodeficiency virus type 1 Gag engages the Bro1 domain of ALIX/AIP1 through the nucleocapsid.

Authors:  Sergei Popov; Elena Popova; Michio Inoue; Heinrich G Göttlinger
Journal:  J Virol       Date:  2007-11-21       Impact factor: 5.103

10.  Nucleocapsid mutations turn HIV-1 into a DNA-containing virus.

Authors:  Laurent Houzet; Zakia Morichaud; Ludovic Didierlaurent; Delphine Muriaux; Jean-Luc Darlix; Marylène Mougel
Journal:  Nucleic Acids Res       Date:  2008-02-22       Impact factor: 16.971

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  36 in total

1.  Selection of fully processed HIV-1 nucleocapsid protein is required for optimal nucleic acid chaperone activity in reverse transcription.

Authors:  Tiyun Wu; Robert J Gorelick; Judith G Levin
Journal:  Virus Res       Date:  2014-06-20       Impact factor: 3.303

2.  Role of the SP2 domain and its proteolytic cleavage in HIV-1 structural maturation and infectivity.

Authors:  Alex de Marco; Anke-Mareil Heuser; Bärbel Glass; Hans-Georg Kräusslich; Barbara Müller; John A G Briggs
Journal:  J Virol       Date:  2012-10-10       Impact factor: 5.103

3.  A murine retrovirus co-Opts YB-1, a translational regulator and stress granule-associated protein, to facilitate virus assembly.

Authors:  Darrin V Bann; Andrea R Beyer; Leslie J Parent
Journal:  J Virol       Date:  2014-02-05       Impact factor: 5.103

4.  Investigation of the structure and dynamics of the capsid-spacer peptide 1-nucleocapsid fragment of the HIV-1 gag polyprotein by solution NMR spectroscopy.

Authors:  Lalit Deshmukh; Rodolfo Ghirlando; G Marius Clore
Journal:  Angew Chem Int Ed Engl       Date:  2013-12-11       Impact factor: 15.336

5.  Budding of retroviruses utilizing divergent L domains requires nucleocapsid.

Authors:  Nana F Bello; Vincent Dussupt; Paola Sette; Victoria Rudd; Kunio Nagashima; Frederic Bibollet-Ruche; Chaoping Chen; Ronald C Montelaro; Beatrice H Hahn; Fadila Bouamr
Journal:  J Virol       Date:  2012-02-15       Impact factor: 5.103

6.  A protein ballet around the viral genome orchestrated by HIV-1 reverse transcriptase leads to an architectural switch: from nucleocapsid-condensed RNA to Vpr-bridged DNA.

Authors:  Sébastien Lyonnais; Robert J Gorelick; Fatima Heniche-Boukhalfa; Serge Bouaziz; Vincent Parissi; Jean-François Mouscadet; Tobias Restle; Jose Maria Gatell; Eric Le Cam; Gilles Mirambeau
Journal:  Virus Res       Date:  2012-09-24       Impact factor: 3.303

7.  Distinct nucleic acid interaction properties of HIV-1 nucleocapsid protein precursor NCp15 explain reduced viral infectivity.

Authors:  Wei Wang; Nada Naiyer; Mithun Mitra; Jialin Li; Mark C Williams; Ioulia Rouzina; Robert J Gorelick; Zhengrong Wu; Karin Musier-Forsyth
Journal:  Nucleic Acids Res       Date:  2014-05-09       Impact factor: 16.971

8.  Nucleocapsid Protein Precursors NCp9 and NCp15 Suppress ATP-Mediated Rescue of AZT-Terminated Primers by HIV-1 Reverse Transcriptase.

Authors:  Moisés A Árquez; Samara Martín-Alonso; Robert J Gorelick; Walter A Scott; Antonio J Acosta-Hoyos; Luis Menéndez-Arias
Journal:  Antimicrob Agents Chemother       Date:  2020-09-21       Impact factor: 5.191

9.  The N-terminal zinc finger and flanking basic domains represent the minimal region of the human immunodeficiency virus type-1 nucleocapsid protein for targeting chaperone function.

Authors:  Mithun Mitra; Wei Wang; My-Nuong Vo; Ioulia Rouzina; George Barany; Karin Musier-Forsyth
Journal:  Biochemistry       Date:  2013-11-06       Impact factor: 3.162

10.  Selection of drug-resistant feline immunodeficiency virus (FIV) encoding FIV/HIV chimeric protease in the presence of HIV-specific protease inhibitors.

Authors:  Ying-Chuan Lin; Meaghan Happer; John H Elder
Journal:  J Virol       Date:  2013-05-29       Impact factor: 5.103

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