Literature DB >> 21036993

Genome sequence of strain HTCC2083, a novel member of the marine clade Roseobacter.

Ilnam Kang1, Kevin L Vergin, Hyun-Myung Oh, Ahyoung Choi, Stephen J Giovannoni, Jang-Cheon Cho.   

Abstract

Strain HTCC2083 was isolated from Oregon seawater using dilution-to-extinction culturing and represents a novel member of the Roseobacter clade. The draft genome sequence of HTCC2083 is presented here. The genome is predicted to contain genes for aerobic anoxygenic phototrophy, sulfite-oxidizing chemolithotrophy, anapleurotic CO(2) fixation, carbon monoxide oxidation, and dimethylsulfoniopropionate (DMSP) utilization.

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Year:  2010        PMID： 21036993      PMCID： PMC3019945          DOI： 10.1128/JB.01268-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  GenDB--an open source genome annotation system for prokaryote genomes.

Authors:  Folker Meyer; Alexander Goesmann; Alice C McHardy; Daniela Bartels; Thomas Bekel; Jörn Clausen; Jörn Kalinowski; Burkhard Linke; Oliver Rupp; Robert Giegerich; Alfred Pühler
Journal:  Nucleic Acids Res       Date:  2003-04-15       Impact factor: 16.971

2.  Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria.

Authors:  Jang-Cheon Cho; Stephen J Giovannoni
Journal:  Appl Environ Microbiol       Date:  2004-01       Impact factor: 4.792

3.  High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates.

Authors:  Stephanie A Connon; Stephen J Giovannoni
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

4.  Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment.

Authors:  Mary Ann Moran; Alison Buchan; José M González; John F Heidelberg; William B Whitman; Ronald P Kiene; James R Henriksen; Gary M King; Robert Belas; Clay Fuqua; Lauren Brinkac; Matt Lewis; Shivani Johri; Bruce Weaver; Grace Pai; Jonathan A Eisen; Elisha Rahe; Wade M Sheldon; Wenying Ye; Todd R Miller; Jane Carlton; David A Rasko; Ian T Paulsen; Qinghu Ren; Sean C Daugherty; Robert T Deboy; Robert J Dodson; A Scott Durkin; Ramana Madupu; William C Nelson; Steven A Sullivan; M J Rosovitz; Daniel H Haft; Jeremy Selengut; Naomi Ward
Journal:  Nature       Date:  2004-12-16       Impact factor: 49.962

Review 5.  Overview of the marine roseobacter lineage.

Authors:  Alison Buchan; José M González; Mary Ann Moran
Journal:  Appl Environ Microbiol       Date:  2005-10       Impact factor: 4.792

6.  The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism.

Authors:  Wesley D Swingley; Sumedha Sadekar; Stephen D Mastrian; Heather J Matthies; Jicheng Hao; Hector Ramos; Chaitanya R Acharya; Amber L Conrad; Heather L Taylor; Liza C Dejesa; Maulik K Shah; Maeve E O'huallachain; Michael T Lince; Robert E Blankenship; J Thomas Beatty; Jeffrey W Touchman
Journal:  J Bacteriol       Date:  2006-11-10       Impact factor: 3.490

7.  Ecological genomics of marine Roseobacters.

Authors:  M A Moran; R Belas; M A Schell; J M González; F Sun; S Sun; B J Binder; J Edmonds; W Ye; B Orcutt; E C Howard; C Meile; W Palefsky; A Goesmann; Q Ren; I Paulsen; L E Ulrich; L S Thompson; E Saunders; A Buchan
Journal:  Appl Environ Microbiol       Date:  2007-05-25       Impact factor: 4.792

Review 8.  Resourceful heterotrophs make the most of light in the coastal ocean.

Authors:  Mary Ann Moran; William L Miller
Journal:  Nat Rev Microbiol       Date:  2007-10       Impact factor: 60.633

9.  Genome characteristics of a generalist marine bacterial lineage.

Authors:  Ryan J Newton; Laura E Griffin; Kathy M Bowles; Christof Meile; Scott Gifford; Carrie E Givens; Erinn C Howard; Eric King; Clinton A Oakley; Chris R Reisch; Johanna M Rinta-Kanto; Shalabh Sharma; Shulei Sun; Vanessa Varaljay; Maria Vila-Costa; Jason R Westrich; Mary Ann Moran
Journal:  ISME J       Date:  2010-01-14       Impact factor: 10.302

10.  The integrated microbial genomes system: an expanding comparative analysis resource.

Authors:  Victor M Markowitz; I-Min A Chen; Krishna Palaniappan; Ken Chu; Ernest Szeto; Yuri Grechkin; Anna Ratner; Iain Anderson; Athanasios Lykidis; Konstantinos Mavromatis; Natalia N Ivanova; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2009-10-28       Impact factor: 16.971
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  4 in total

1.  High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.

Authors:  Joseph A Christie-Oleza; Guylaine Miotello; Jean Armengaud
Journal:  BMC Genomics       Date:  2012-02-15       Impact factor: 3.969

2.  Microbial Consortium Associated with the Antarctic Marine Ciliate Euplotes focardii: An Investigation from Genomic Sequences.

Authors:  Sandra Pucciarelli; Raghul Rajan Devaraj; Alessio Mancini; Patrizia Ballarini; Michele Castelli; Martina Schrallhammer; Giulio Petroni; Cristina Miceli
Journal:  Microb Ecol       Date:  2015-02-24       Impact factor: 4.552

3.  Extremophiles in an Antarctic Marine Ecosystem.

Authors:  Iain Dickinson; William Goodall-Copestake; Michael A S Thorne; Thomas Schlitt; Maria L Ávila-Jiménez; David A Pearce
Journal:  Microorganisms       Date:  2016-01-11

4.  Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom.

Authors:  Insa Bakenhus; Sonja Voget; Anja Poehlein; Thorsten Brinkhoff; Rolf Daniel; Meinhard Simon
Journal:  Stand Genomic Sci       Date:  2018-04-11
  4 in total

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