Literature DB >> 21033804

A model proton-transfer system in the condensed phase: NH4(+)OOH(-), a crystal with short intermolecular H-bonds.

Andrei V Churakov1, Petr V Prikhodchenko, Ovadia Lev, Alexander G Medvedev, Tatiana A Tripol'skaya, Mikhail V Vener.   

Abstract

The crystal structure of NH(4)(+)OOH(-) is determined from single-crystal x-ray data obtained at 150 K. The crystal belongs to the space group P2(1)/c and has four molecules in a unit cell. The structure consists of discrete NH(4)(+) and OOH(-) ions. The OOH(-) ions are linked by short hydrogen bonds (2.533 Å) to form parallel infinite chains. The ammonium ions form links between these chains (the N⋯O distances vary from 2.714 to 2.855 Å) giving a three-dimensional network. The harmonic IR spectrum and H-bond energies are computed at the Perdew-Burke-Ernzerhof (PBE)/6-31G(∗∗) level with periodic boundary conditions. A detailed analysis of the shared (bridging) protons' dynamics is obtained from the CPMD simulations at different temperatures. PBE functional with plane-wave basis set (110 Ry) is used. At 10 K the shared proton sits near the oxygen atom, only a few proton jumps along the chain are detected at 70 K while at 270 K numerous proton jumps exist in the trajectory. The local-minimum structure of the space group Cc is localized. It appears as a result of proton transfer along a chain. This process is endothermic (∼2 kJ/mol) and is described as P2(1)/c↔2Cc. The computed IR spectrum at 10 K is close to the harmonic one, the numerous bands appear at 70 K while at 270 K it shows a very broad absorption band that covers frequencies from about 1000 to 3000 cm(-1). The advantages of the NH(4)(+)OOH(-) crystal as a promising model for the experimental and DFT based molecular dynamics simulation studies of proton transfer along the chain are discussed.

Entities:  

Year:  2010        PMID: 21033804     DOI: 10.1063/1.3493688

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  3 in total

1.  Combined X-ray Crystallographic, IR/Raman Spectroscopic, and Periodic DFT Investigations of New Multicomponent Crystalline Forms of Anthelmintic Drugs: A Case Study of Carbendazim Maleate.

Authors:  Alexander P Voronin; Artem O Surov; Andrei V Churakov; Olga D Parashchuk; Alexey A Rykounov; Mikhail V Vener
Journal:  Molecules       Date:  2020-05-21       Impact factor: 4.411

Review 2.  Crystalline Peroxosolvates: Nature of the Coformer, Hydrogen-Bonded Networks and Clusters, Intermolecular Interactions.

Authors:  Alexander G Medvedev; Andrei V Churakov; Petr V Prikhodchenko; Ovadia Lev; Mikhail V Vener
Journal:  Molecules       Date:  2020-12-23       Impact factor: 4.411

3.  Triple hydrogen bonding in a circular arrangement: ab initio, DFT and first-principles MD studies of tris-hydroxyaryl enamines.

Authors:  Agata Martyniak; Jarosław Panek; Aneta Jezierska-Mazzarello; Aleksander Filarowski
Journal:  J Comput Aided Mol Des       Date:  2012-09-07       Impact factor: 3.686

  3 in total

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