Literature DB >> 21029847

Logic regression and its extensions.

Holger Schwender1, Ingo Ruczinski.   

Abstract

Logic regression is an adaptive classification and regression procedure, initially developed to reveal interacting single nucleotide polymorphisms (SNPs) in genetic association studies. In general, this approach can be used in any setting with binary predictors, when the interaction of these covariates is of primary interest. Logic regression searches for Boolean (logic) combinations of binary variables that best explain the variability in the outcome variable, and thus, reveals variables and interactions that are associated with the response and/or have predictive capabilities. The logic expressions are embedded in a generalized linear regression framework, and thus, logic regression can handle a variety of outcome types, such as binary responses in case-control studies, numeric responses, and time-to-event data. In this chapter, we provide an introduction to the logic regression methodology, list some applications in public health and medicine, and summarize some of the direct extensions and modifications of logic regression that have been proposed in the literature.
Copyright © 2010 Elsevier Inc. All rights reserved.

Mesh:

Year:  2010        PMID: 21029847     DOI: 10.1016/B978-0-12-380862-2.00002-3

Source DB:  PubMed          Journal:  Adv Genet        ISSN: 0065-2660            Impact factor:   1.944


  14 in total

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Review 2.  Risk estimation and risk prediction using machine-learning methods.

Authors:  Jochen Kruppa; Andreas Ziegler; Inke R König
Journal:  Hum Genet       Date:  2012-07-03       Impact factor: 4.132

3.  A novel approach to detect cumulative genetic effects and genetic interactions in Crohn's disease.

Authors:  Ming-Hsi Wang; Claudio Fiocchi; Stephan Ripke; Xiaofeng Zhu; Richard H Duerr; Jean-Paul Achkar
Journal:  Inflamm Bowel Dis       Date:  2013-08       Impact factor: 5.325

4.  Gene-gene and gene-environment interactions in ulcerative colitis.

Authors:  Ming-Hsi Wang; Claudio Fiocchi; Xiaofeng Zhu; Stephan Ripke; M Ilyas Kamboh; Nancy Rebert; Richard H Duerr; Jean-Paul Achkar
Journal:  Hum Genet       Date:  2013-11-17       Impact factor: 4.132

5.  Using logic regression to characterize extreme heat exposures and their health associations: a time-series study of emergency department visits in Atlanta.

Authors:  Shan Jiang; Joshua L Warren; Noah Scovronick; Shannon E Moss; Lyndsey A Darrow; Matthew J Strickland; Andrew J Newman; Yong Chen; Stefanie T Ebelt; Howard H Chang
Journal:  BMC Med Res Methodol       Date:  2021-04-26       Impact factor: 4.615

Review 6.  An NGS Workflow Blueprint for DNA Sequencing Data and Its Application in Individualized Molecular Oncology.

Authors:  Jian Li; Aarif Mohamed Nazeer Batcha; Björn Grüning; Ulrich R Mansmann
Journal:  Cancer Inform       Date:  2016-04-10

7.  Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework.

Authors:  Gaurav Kumar; Edmond J Breen; Shoba Ranganathan
Journal:  BMC Syst Biol       Date:  2013-02-06

8.  A Polygenic Approach to the Study 
of Polygenic Diseases.

Authors:  D Lvovs; O O Favorova; A V Favorov
Journal:  Acta Naturae       Date:  2012-07       Impact factor: 1.845

9.  Logic regression-derived algorithms for syndromic management of vaginal infections.

Authors:  Sujit D Rathod; Tan Li; Jeffrey D Klausner; Alan Hubbard; Arthur L Reingold; Purnima Madhivanan
Journal:  BMC Med Inform Decis Mak       Date:  2015-12-16       Impact factor: 2.796

10.  The identification of complex interactions in epidemiology and toxicology: a simulation study of boosted regression trees.

Authors:  Erik Lampa; Lars Lind; P Monica Lind; Anna Bornefalk-Hermansson
Journal:  Environ Health       Date:  2014-07-04       Impact factor: 5.984

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