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Literature DB >> 2101925

Codon usage and secondary structure of mRNA.

Abstract

The specific codon usage pattern of the repetitive unit nucleotide sequence of silk fibroin mRNA suggests that selection has operated on the codon usage to optimize the secondary structure characteristic of the mRNA. The correlation between the stability map of local secondary structure of type I collagen mRNA and the codon usage pattern and the translation rate of the collagen is also implied.

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Year: 1990 PMID： 2101925

Source DB: PubMed Journal: Nucleic Acids Symp Ser ISSN： 0261-3166

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Cited

9 in total

1. The complete mitochondrial genome analysis of the tiger (Panthera tigris).

Authors: Thitika Kitpipit; Shanan S Tobe; Adrian Linacre
Journal: Mol Biol Rep Date: 2011-12-30 Impact factor: 2.316

2. Patterns and influencing factor of synonymous codon usage in porcine circovirus.

Authors: Xin-sheng Liu; Yong-guang Zhang; Yu-zhen Fang; Yong-lu Wang
Journal: Virol J Date: 2012-03-15 Impact factor: 4.099

3. Evolutionary basis of codon usage and nucleotide composition bias in vertebrate DNA viruses.

Authors: Laura A Shackelton; Colin R Parrish; Edward C Holmes
Journal: J Mol Evol Date: 2006-03-22 Impact factor: 3.973

4. A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes.

Authors: R D Knight; S J Freeland; L F Landweber
Journal: Genome Biol Date: 2001-03-22 Impact factor: 13.583

Codon usage and secondary structure of mRNA.

1. The complete mitochondrial genome analysis of the tiger (Panthera tigris).

2. Patterns and influencing factor of synonymous codon usage in porcine circovirus.

3. Evolutionary basis of codon usage and nucleotide composition bias in vertebrate DNA viruses.

4. A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes.

5. Evolutionary and genetic analysis of the VP2 gene of canine parvovirus.

6. The coexistence of the nucleosome positioning code with the genetic code on eukaryotic genomes.

7. Computational identification of rare codons of Escherichia coli based on codon pairs preference.

8. Evolution of Synonymous Codon Usage Bias in West African and Central African Strains of Monkeypox Virus.

9. Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements.